PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_19.216
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 284aa    MW: 32227.3 Da    PI: 9.8129
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_19.216genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-082366344
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                   WT eE +++  a + +G +   +W ++a++++ g+t  ++   +
  evm.model.supercontig_19.216 23 IWTREENKRFESALAIYGEDtpdRWLKVAAMIP-GKTVFDVMKQY 66
                                  5********************************.***99887776 PP

2Myb_DNA-binding37.94e-12123167347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT++E+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  evm.model.supercontig_19.216 123 PWTEDEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 167
                                   8*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.3261972IPR017884SANT domain
SMARTSM007171.0E-82072IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-42168IPR009057Homeodomain-like
SuperFamilySSF466893.73E-122276IPR009057Homeodomain-like
CDDcd001674.16E-72469No hitNo description
PfamPF002491.1E-62467IPR001005SANT/Myb domain
PROSITE profilePS5129418.189116172IPR017930Myb domain
SuperFamilySSF466896.03E-15117171IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17119171IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.2E-10120172IPR009057Homeodomain-like
SMARTSM007177.2E-10120170IPR001005SANT/Myb domain
PfamPF002491.6E-9123167IPR001005SANT/Myb domain
CDDcd001675.25E-8123167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
METLSPVSFM ASPNWFIQES RTIWTREENK RFESALAIYG EDTPDRWLKV AAMIPGKTVF  60
DVMKQYKELE DDVSDIEAGK VPIPGYLSSS FTLELVNNRD FDAYRKKPVS GRASEQERKK  120
GVPWTEDEHR RFLLGLLKYG KGDWRNISRN FVVSKTPTQV ASHAQKYYQR QLSGGKDKRR  180
PSIHDITTFN LTNSAFSEHH SLSLFDHSDV LSPQHKLVSS MPKIGLDWNN PSDAALRTFN  240
SNSANMFKQS PFDIASNGLK LQGQNLYGSA YHGARVKLQN SVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-1624991186RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00489DAPTransfer from AT5G05790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_19.216
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904111.10.0transcription factor DIVARICATA
SwissprotQ8S9H76e-99DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A061FLV91e-147A0A061FLV9_THECC; Duplicated homeodomain-like superfamily protein
STRINGevm.model.supercontig_19.2160.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-100MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]