PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_19.151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | LBD | ||||||||
Protein Properties | Length: 178aa MW: 19865.6 Da PI: 8.6877 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.4 | 3.9e-41 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+l+r+C+++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i evm.model.supercontig_19.151 14 SCAACKFLKRRCSPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIA 94 6******************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lq+++ +l+++la ++++ evm.model.supercontig_19.151 95 LLQRKMVELQHDLAIARAR 113 *************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.69 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-40 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MKAMRGHEPR SSSSCAACKF LKRRCSPNCI FAPYFRSDEP KKFAKVHKVF GASNVSKILI 60 EVPEEQREDT VNSLAYEAEA RLRDPVYGCI GAIALLQRKM VELQHDLAIA RARLARYSAN 120 PSSSSSYISV FNNHMAMPSF NDLPGYGGLL FDGYGQSYSL EINRDGQMYD FSQTPYV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-48 | 9 | 118 | 6 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-48 | 9 | 118 | 6 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_19.151 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021904125.1 | 1e-130 | LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 2e-71 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A438J2F2 | 1e-93 | A0A438J2F2_VITVI; LOB domain-containing protein 21 | ||||
STRING | evm.model.supercontig_19.151 | 1e-130 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10255 | 27 | 35 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 1e-70 | LOB domain-containing protein 21 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_19.151 |
Publications ? help Back to Top | |||
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