PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_19.133 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | LBD | ||||||||
Protein Properties | Length: 177aa MW: 19766.4 Da PI: 6.9448 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 144 | 4.4e-45 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +Ca+Ck+lrr+C+kdC++apyfpa++p+kfa+vhk+FGasnv+k+l++lp e+r da+sslvyeA+ar+rdPvyG+vg i+ evm.model.supercontig_19.133 6 PCASCKLLRRRCVKDCIFAPYFPADDPHKFAIVHKVFGASNVSKMLQELPVEQRGDAVSSLVYEANARMRDPVYGCVGAIS 86 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lq+q++ql+ +la++++e evm.model.supercontig_19.133 87 YLQNQVSQLQMQLAVAQAE 105 ***************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.927 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-44 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MGGNSPCASC KLLRRRCVKD CIFAPYFPAD DPHKFAIVHK VFGASNVSKM LQELPVEQRG 60 DAVSSLVYEA NARMRDPVYG CVGAISYLQN QVSQLQMQLA VAQAEILCIQ MHQDPINTIT 120 QTPSQIDHDH RDDKSFLLDH HHHHHQYYNF ASPAGNVVIQ DSLKRESLFG VHDLVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-47 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-47 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_19.133 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021903937.1 | 1e-130 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 1e-72 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A1R3FW32 | 2e-92 | A0A1R3FW32_COCAP; Uncharacterized protein | ||||
STRING | evm.model.supercontig_19.133 | 1e-129 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 3e-75 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_19.133 |
Publications ? help Back to Top | |||
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