PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_19.121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 377aa MW: 40842.3 Da PI: 4.8037 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.1e-19 | 80 | 130 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r r +lg+f ta eAa a+++a+k+++g evm.model.supercontig_19.121 80 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAVEAALAYDEAAKAMYG 130 56*****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.01E-31 | 80 | 140 | No hit | No description |
Pfam | PF00847 | 6.6E-14 | 80 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 81 | 139 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.496 | 81 | 138 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-20 | 81 | 139 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.1E-35 | 81 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-10 | 82 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-10 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGTFDQAPNV TSIAVDSSRK RKSRSRRDGT SVAETLKKWK EYNEHLDASG DGGKPARKVP 60 AKGSKKGCMK GKGGPENSRC NYRGVRQRTW GKWVAEIREP NRGSRLWLGT FPTAVEAALA 120 YDEAAKAMYG PCALLNLPHA EDLVCFGTAS GSSVATPSGS DSTTTSSHSE VCAADDIKQE 180 FVAIPGLKKE DGQGEARPNA YPHAVIETAT PSSTMKLEAK DGDANIKKLH SGEYHGIKGE 240 AVDYSKDVKS EGKEDESQDY WQTFSMDEMF DVDDLLGAID NDPLVGTGLK QEFDYPPVQV 300 GITDSRLQSE KSSALAYQLQ NPDAKLLGSL HHMEQLPSTV DYGLALLQAQ EHGDNNIELD 360 GQGFMDMDIG LEDLDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-18 | 81 | 138 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 3e-17 | 82 | 143 | 15 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 22 | SRKRKS |
2 | 20 | 27 | RKSRSRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_19.121 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ432868 | 0.0 | KJ432868.1 Carica papaya cultivar Maradol dehydration-responsive element-binding protein 2A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021904202.1 | 0.0 | dehydration-responsive element-binding protein 2C-like | ||||
Refseq | XP_021904203.1 | 0.0 | dehydration-responsive element-binding protein 2C-like | ||||
TrEMBL | A0A185EKL6 | 0.0 | A0A185EKL6_CARPA; Dehydration-responsive element-binding protein 2A | ||||
STRING | evm.model.supercontig_19.121 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8532 | 25 | 38 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 4e-44 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_19.121 |