PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_189.27

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

G2-like

Protein Properties

Length: 274aa MW: 30827.7 Da PI: 9.1562

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_189.27	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	74.9	1.1e-23	208	254	1	47
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvk 47 k+r+rW++eLH+rFve+v++LGG+ekAtPk+il+lm+ +gLt+ hvk evm.model.supercontig_189.27 208 KTRIRWNQELHKRFVECVNHLGGAEKATPKAILKLMNTNGLTIFHVK 254 68********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-19	206	254	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-10	206	254	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-15	208	254	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MGHCFKYQFP AINEEAVSNK LKLGTSSISK IISSHFVSPA SAFFVTERFM GFPQGDQETD 60 VISSCSKSSL YSNPVTPSDQ HSKFSSQVLE RQNLQSISCL QSVPEFEHED DSQNLIASVK 120 SSQIASVKSS QTLEMNKHYT PLLNSTDEDA AMNQTQQYVS FEEYQNRRFK RTSSWIHSLK 180 QPQDTPLGVI PINQRNSIQS RAMISNTKTR IRWNQELHKR FVECVNHLGG AEKATPKAIL 240 KLMNTNGLTI FHVKKTSEKR IEPDAVTRLD PKA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-15	208	259	2	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-15	208	259	2	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-15	208	259	2	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-15	208	259	2	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-15	208	259	2	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-15	208	259	2	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-15	208	259	2	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-15	208	259	2	53	Protein PHOSPHATE STARVATION RESPONSE 1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_189.27

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021887697.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3-like
STRING	evm.model.supercontig_189.27	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	1e-22	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_189.27