PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_189.21
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 655aa    MW: 72412.6 Da    PI: 10.3537
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_189.21genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.7e-111768347
                                  SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47
                                   W t+E++ll++avk++G ++W+++a +++       +  t+  ck +++++
  evm.model.supercontig_189.21 17 IWGTWEELLLACAVKRHGFKNWDSVAMEIQtrtslphLLTTAQTCKQKYRDL 68
                                  5*****************************7777777667777888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.31E-61373IPR009057Homeodomain-like
SMARTSM007179.3E-61471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-41572IPR009057Homeodomain-like
PfamPF002496.6E-101868IPR001005SANT/Myb domain
CDDcd001672.35E-71869No hitNo description
SMARTSM002972.2E-1098397IPR001487Bromodomain
SuperFamilySSF473702.75E-15296400IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.0E-12299411IPR001487Bromodomain
CDDcd043691.92E-13305392No hitNo description
PfamPF004391.5E-9306376IPR001487Bromodomain
PROSITE profilePS5001411.629307378IPR001487Bromodomain
PROSITE patternPS006330312370IPR018359Bromodomain, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MVKETNGTRN SHHPTQIWGT WEELLLACAV KRHGFKNWDS VAMEIQTRTS LPHLLTTAQT  60
CKQKYRDLKR RFTQQGTILE DDDEEDVENK EGDKVENIPW LEELRKVRVA ELRREVQQYD  120
VSILSLQLKV KRLEEEREQS LKQESGSHEK KPDLGNESKA ERSGNGEEQP ETEKPAGKKS  180
GEESDPENRS VNESNSTGSD PKTGDISAGG NERGPEREGL GKQGPVVKTE ENEAVGTGED  240
SCNRNSGVSQ SEELGDSVTQ VSGSSASMGR KRKRKGRRRK ELFGDDHGIR GGPVKSEPLI  300
GFLEMIRANP HASFFERRLP SQESKNYKTL VRQHVDIESI QAKIEQGCYS SCTLSFYKDL  360
LLLFNNAIVF FPKPSLESIT AHELRTLVSN QMKKETQKSE SFSAAPAPSS PITAQLKPEL  420
ERSDSLLARQ QSSAPLIVCR KRSSISTKPS SSSGFGSKGD QQQSDEGKPA SGKKLQAADL  480
SLKEKEKPVT GTRSSRRSSS SKNTVTANPN KKQSTTNSGS KQESPKTEKK KTEALMGSDK  540
KKSVVDFLKR IKKNSPADQT TKKGGNNKGG GEQKKNTGNN SNNNNNGKKE KGKERVLRSN  600
GEKKKGKEEG SPSKRNVGRP PKKEAETTNA ETLGKRGRES GGGKEKQQRK RSRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269274RKRKRK
2269277RKRKRKGRR
3273280RKGRRRKE
4647653QRKRSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_189.21
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887688.10.0uncharacterized protein LOC110806980
TrEMBLA0A067J9F80.0A0A067J9F8_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_189.210.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-124DNA-binding bromodomain-containing protein