PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_187.27
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TALE
Protein Properties Length: 448aa    MW: 49301.5 Da    PI: 6.2567
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_187.27genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-073954282154
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   k +yp++e++++L +++gL+ +q+ +WF N+R +
  evm.model.supercontig_187.27 395 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 428
                                   469*****************************87 PP
2ELK28.72.9e-10349370122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELKh+L+++Y+++++++++E++
  evm.model.supercontig_187.27 349 ELKHELKQGYKEKIVDIREEIL 370
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-19182226IPR005540KNOX1
PfamPF037908.2E-18184225IPR005540KNOX1
SMARTSM012562.5E-29237292IPR005541KNOX2
PfamPF037912.9E-21241291IPR005541KNOX2
SMARTSM011886.1E-4349370IPR005539ELK domain
PROSITE profilePS512139.969349369IPR005539ELK domain
PfamPF037891.0E-6349370IPR005539ELK domain
PROSITE profilePS5007111.726369432IPR001356Homeobox domain
SMARTSM003894.7E-11371436IPR001356Homeobox domain
SuperFamilySSF466895.13E-16371434IPR009057Homeodomain-like
CDDcd000861.46E-11372433No hitNo description
Gene3DG3DSA:1.10.10.604.8E-25376433IPR009057Homeodomain-like
PfamPF059201.3E-17389428IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MAFHHNHLSQ ELPLHHFTDQ QQQQQQQAQN QQHLPETTAP SWLNTALLRS QQPQPPPHAH  60
FSDTNFLNLH TANTTNPGAA NNASANANSD STASQAPNQW LSRSSSSLLH RNHSDVIDDV  120
AAAAAAAAAG GGGAESIIGG GVESADLKSN SDNMNNNNNN KSEGVVVESG GGGESVVNWQ  180
NARYKADILA HPLYEQLLSA HVACLRIATP VDQLPRIDAQ LAQSQHVVAK YSALSAAQGL  240
VGDDKELDQF MTHYVLLLCS FKEQLQQHVR VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG  300
ATMSDDDDDQ VDSDANLFDG SLDGADNMGF GPLIPTESER SLMERVRQEL KHELKQGYKE  360
KIVDIREEIL RKRRAGKLPG DTTSVLKAWW QSHSKWPYPT EEDKARLVQE TGLQLKQINN  420
WFINQRKRNW HSNPSTSTVL KSKRKRY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1425445RKRNWHSNPSTSTVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_187.27
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887749.10.0homeobox protein knotted-1-like 4 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A067E7A20.0A0A067E7A2_CITSI; Uncharacterized protein
TrEMBLV4TSP30.0V4TSP3_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_187.270.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-176KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]