PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_184.33
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 299aa    MW: 32377.3 Da    PI: 5.6707
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_184.33genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY51.51.9e-161261652159
                                   -EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY  21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                    r+YYrC+s+ gC ++k+ver+++dp+++++tY+ eHnh+
  evm.model.supercontig_184.33 126 RRGYYRCSSSkGCLARKQVERNRSDPTIFIVTYTAEHNHP 165
                                   589*****998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.8E-10115166IPR003657WRKY domain
PfamPF031061.3E-13124165IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-16124167IPR003657WRKY domain
SuperFamilySSF1182902.22E-13125167IPR003657WRKY domain
PROSITE profilePS5081121.161127167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEDDWDLHAV VRGCTATSVA ATTATTATHA ADSHQKVFIS QDLSSVVDPF EARSHFEELH  60
ELYRPFFPKS PSLSSQTNLH HGQAQLRCQE QQQKKESQLA ASVTSVISTA SSNSTAANSH  120
TPRSKRRGYY RCSSSKGCLA RKQVERNRSD PTIFIVTYTA EHNHPAPTHR NSLAGSTRQK  180
PLNPQTATAG DSNRTSPKPT TTTTTTTTLC SSSSPATSMD EEPTAPHGSK VESMEDMVLE  240
DEEEDDFLGL SSDTVVSDDF FEGLEGLTGM NSGDYFSEHH FPASLWMSNN ATTAASGI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_184.33
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887800.10.0WRKY transcription factor 22
SwissprotO046091e-62WRK22_ARATH; WRKY transcription factor 22
TrEMBLA0A061DTY23e-86A0A061DTY2_THECC; WRKY transcription factor 23, putative
STRINGevm.model.supercontig_184.330.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78102741
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-38WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  4. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  5. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  6. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]