PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_180.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | WRKY | ||||||||
Protein Properties | Length: 322aa MW: 36625.3 Da PI: 6.7154 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.7 | 3.3e-30 | 148 | 205 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers+edp v++itY+ eH h evm.model.supercontig_180.9 148 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSREDPGVFIITYTAEHSH 205 79*************************998***************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.4E-32 | 133 | 208 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.2E-26 | 141 | 208 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.029 | 142 | 208 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-35 | 147 | 207 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-25 | 149 | 205 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MGEYVCMEGW DLQAIVRAGC TNFEACGDFK VPPSSCFGLD HHELRSMDEP EDLLISSEIF 60 QESREVASDE LGQLYKPFYP VLHPLSPQTI FATSMSLPEE FKHPQNGQKK KLLQPLPSGS 120 AHEPKAKRSK KTQQKKVVKQ VTEDDLTSDK WAWRKYGQKP IKGSPYPRSY YRCSSSKGCL 180 ARKQVERSRE DPGVFIITYT AEHSHGHPTR RNSLAGTTRV KSSTPKFPAT PTHDHDHDHD 240 HDHLHLPPPK PLTKPTEYDR LLQYVAVKQE EERKPAVFKG CDHDLDISMP DIIFSDELFP 300 NLENLYGMAM EFSFDGCFSD Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-18 | 137 | 208 | 4 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00448 | DAP | Transfer from AT4G23550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_180.9 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021887933.1 | 0.0 | probable WRKY transcription factor 29 isoform X1 | ||||
Swissprot | Q9SUS1 | 8e-57 | WRK29_ARATH; Probable WRKY transcription factor 29 | ||||
TrEMBL | A0A3N7FWR6 | 8e-81 | A0A3N7FWR6_POPTR; Uncharacterized protein | ||||
STRING | evm.model.supercontig_180.9 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6090 | 25 | 45 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 1e-39 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_180.9 |