PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_18.56
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 269aa    MW: 30279.2 Da    PI: 4.5948
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_18.56genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.67.1e-3058116259
                                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                  +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+
  evm.model.supercontig_18.56  58 SDLWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDSSFLIITYTSSHNHP 116
                                  699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-3149118IPR003657WRKY domain
SuperFamilySSF1182907.19E-2654118IPR003657WRKY domain
SMARTSM007744.6E-3557117IPR003657WRKY domain
PROSITE profilePS5081130.89458118IPR003657WRKY domain
PfamPF031068.1E-2559116IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDETTDHRGL SAKLDSEASE LESPATPASK RRKLVEKHVV RVKTGENVGK LKNEGPPSDL  60
WSWRKYGQKP IKGSPYPRGY YRCSTSKGCS AKKQVERCRT DSSFLIITYT SSHNHPGPDI  120
DMTNTDPKPE TQTQLPTRED DPPTPKQEPT TTRDDDQDQE THDDDHHQYH SFQYLQPTLN  180
ESEDGIIINQ DDDPIINPNE KLDFLLVEEP LIPSCSHLLN LSSSTEKSEE NDFFDELEEL  240
PCTSSSSGFR SFMGIGNVFD ERIPVVPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-21591181879Disease resistance protein RRS1
5w3x_D2e-21591181879Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_18.56
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1445812e-46KU144581.1 Panax ginseng WRKY8 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904390.10.0probable WRKY transcription factor 65
TrEMBLA0A0U1WT729e-93A0A0U1WT72_HEVBR; WRKY super family protein
STRINGevm.model.supercontig_18.560.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153711117
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-35WRKY DNA-binding protein 35