PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_18.208 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 490aa MW: 54796.5 Da PI: 8.4928 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.4 | 7.7e-19 | 51 | 97 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+ Ede l+ av+++ g++Wk+Ia++++ Rt+ qc +rwqk+l evm.model.supercontig_18.208 51 KGGWTQKEDENLISAVQKYKGKNWKKIAECVP-DRTDVQCLHRWQKVL 97 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.2e-17 | 103 | 149 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd l+++ v + G++ W+ Ia++++ gR +kqc++rw+++l evm.model.supercontig_18.208 103 KGPWSIEEDNLIIKIVGEQGNKKWSEIAKHLP-GRIGKQCRERWYNHL 149 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 57.4 | 3.4e-18 | 155 | 197 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT+eE+ +l+ a++++G++ W+ Ia+ ++ gRt++++k++w+ evm.model.supercontig_18.208 155 RSAWTKEEEIILITAHREHGNK-WAEIAKLLP-GRTENSIKNHWN 197 789*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.532 | 46 | 97 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-16 | 50 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-16 | 51 | 97 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.18E-20 | 52 | 124 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 53 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.26E-14 | 54 | 97 | No hit | No description |
PROSITE profile | PS51294 | 28.682 | 98 | 153 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-30 | 100 | 196 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-15 | 102 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.04E-13 | 105 | 149 | No hit | No description |
Pfam | PF13921 | 1.2E-16 | 106 | 164 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-25 | 111 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.894 | 154 | 204 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-17 | 154 | 202 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.48E-13 | 157 | 197 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 157 | 203 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 490 aa Download sequence Send to blast |
MGEDKEPNFV REKEGLDAAS PSVSNGSCDH LPLKPASVHG RITGPTRRST KGGWTQKEDE 60 NLISAVQKYK GKNWKKIAEC VPDRTDVQCL HRWQKVLNPD LVKGPWSIEE DNLIIKIVGE 120 QGNKKWSEIA KHLPGRIGKQ CRERWYNHLN PEIKRSAWTK EEEIILITAH REHGNKWAEI 180 AKLLPGRTEN SIKNHWNCSV RKKAELFSSS NPELRICGLN NENRKSDTIK INTSRQDLNH 240 NRRMDSLSLD LPLGNEIKDA DKVQKITGSG NEDALATSLN GGNCREGCTY EESKHIGSSN 300 QTSPFHDTSC VSFPHLLTRT DEAGKHINFS PSRKMMEPLS ALSTPLSSHG CNGKTRSSLS 360 DHGTEEVAFP VTSEVLATPP SQNEGELPTS CMTPESILRI VASTYKNTPS IIRRRGSSAR 420 KRSRNGCSCS LEERIDKLEN SHEIQHPRFC DNINDVQQDL VSSLKSQKLE SCATNSMEKS 480 PSLETVKRW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-65 | 51 | 204 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-65 | 51 | 204 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_18.208 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021904374.1 | 0.0 | transcription factor MYB3R-2-like isoform X2 | ||||
TrEMBL | A0A1Q3CZD0 | 1e-111 | A0A1Q3CZD0_CEPFO; Myb_DNA-bind_6 domain-containing protein (Fragment) | ||||
STRING | evm.model.supercontig_18.208 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1667 | 28 | 87 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32730.1 | 2e-82 | Homeodomain-like protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_18.208 |