PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_18.15
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 359aa    MW: 38782.9 Da    PI: 4.5411
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_18.15genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.4e-1011371948
                                 TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 +G  +W++Ia++++ gRt++++k++w+++l
  evm.model.supercontig_18.15 11 HG--RWSLIASHLP-GRTDNEIKNYWNSHL 37
                                 55..5*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.458141IPR017930Myb domain
CDDcd001676.14E-8337No hitNo description
SuperFamilySSF466891.33E-8941IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-131037IPR009057Homeodomain-like
PfamPF002493.2E-81037IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSKLKRKAFN HGRWSLIASH LPGRTDNEIK NYWNSHLSRK IHSFRKLISN ETLSIIADVA  60
KLAAATKPKP SANKPGSGIG RPAKKKRKAR NAQNDVAAKQ PEAKIPLASE PTVSSSLPCP  120
PTTPDLDEGA MRDVYCCMNL DHPCAESDTT SFQNPAGRSS PSRDSSCTGH AVADDNDHGI  180
LLCSSEEREQ ALNGNSMSCP GNGGQKETET LSGPHDVVIN GDDDGMLCFN ELMGEELLDP  240
DELLTVSDYS AVVLNGDDQR TIMSSGSGGN CTMTSSSSCS SEISCLDNEK FDLGNNWEWI  300
DNYLEGQNGI LDVEKDDMLS WLWDNDDGAG IGSGEKRNIS LDESDFDKQN AIVAWLLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_18.15
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904370.10.0transcription factor MYB12-like
STRINGevm.model.supercontig_18.150.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17349511
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-15myb domain protein 12