PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_18.117 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22191.6 Da PI: 8.4841 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.1 | 2e-40 | 13 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C aCk+lrrkC+k+C++apyf a+q +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA arardPvyG+vg+i evm.model.supercontig_18.117 13 PCGACKFLRRKCVKGCIFAPYFDADQgTAHFAAVHKVFGASNASKLLMRIPTHKRLDAVVTLCYEALARARDPVYGCVGHI 93 7*************************89***************************************************** PP DUF260 81 lklqqqleqlkaelallkee 100 ++lqqq+ +l+aela+++++ evm.model.supercontig_18.117 94 FTLQQQVVNLQAELAYIQAR 113 ***************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.414 | 12 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.7E-39 | 13 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MEGMSGNNGG GGPCGACKFL RRKCVKGCIF APYFDADQGT AHFAAVHKVF GASNASKLLM 60 RIPTHKRLDA VVTLCYEALA RARDPVYGCV GHIFTLQQQV VNLQAELAYI QARLSTLQRL 120 SMAAQQPSPP PLSTPAPAIQ GEIGSSILEL ISTGFNPLQV PPPSATEALN RSYSMAVLDE 180 TEVQGDLQAL AREFVCRYLP GVRFRP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-38 | 9 | 107 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-38 | 9 | 107 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_18.117 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021904378.1 | 1e-151 | LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 1e-69 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A2C9WPF0 | 5e-88 | A0A2C9WPF0_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_18.117 | 1e-151 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 | Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 2e-70 | LOB domain-containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_18.117 |