PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_18.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB | ||||||||
Protein Properties | Length: 431aa MW: 47197.7 Da PI: 4.8447 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l ++++ G g+W++ ++ g+ R++k+c++rw +yl evm.model.supercontig_18.11 14 KGRWTAEEDEKLTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWMNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.4 | 9e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE+el+v++ + lG++ W++I ++++ gRt++++k++w+ + evm.model.supercontig_18.11 67 RGSITAEEEELIVKLPTTLGNR-WSLIVSHLP-GRTDNEIKNYWNCH 111 7889******************.*********.***********977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.603 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.6E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.73E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 22.344 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-11 | 67 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.70E-9 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MGRAPCCGKV GLNKGRWTAE EDEKLTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWMNY 60 LRADLKRGSI TAEEEELIVK LPTTLGNRWS LIVSHLPGRT DNEIKNYWNC HLRRKIHNLR 120 KFISNETLSV IADVTNLAAA TEPKPPADKP SSGTRRPAKK KHKAGNLRND VAAKQPEAKV 180 LLASKPLPCP PTNLDLDEGA MRDVNCFMNL DHPCAERDTT SFPNPAGGSS PSRDSTSAGH 240 AVADDNVHGI LSCSGEEREE TLNGNSMSCP GSGGQKETET LLGPHNDVTN GDDDWILCFS 300 ELMDKELLDP DELLTVSDYS AVVLTGVDQG TIMSSGGGSG GNCSMTISSS CSSEISCLDT 360 EKFDLGNNWE WIYNYLERHN EILDVEKDDM FSWLWDNDNE VGIGNGEKSN ISGYESDFDK 420 QNAIVAWLLS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_18.11 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021904418.1 | 0.0 | myb-related protein Zm38-like isoform X1 | ||||
STRING | evm.model.supercontig_18.11 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17349 | 5 | 11 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 2e-69 | myb domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_18.11 |