PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_18.11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 431aa    MW: 47197.7 Da    PI: 4.8447
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_18.11genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161461148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 +grWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  evm.model.supercontig_18.11 14 KGRWTAEEDEKLTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWMNYL 61
                                 79******************************99************97 PP

2Myb_DNA-binding46.49e-1567111147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  rg+ T+eE+el+v++ + lG++ W++I ++++ gRt++++k++w+ +
  evm.model.supercontig_18.11  67 RGSITAEEEELIVKLPTTLGNR-WSLIVSHLP-GRTDNEIKNYWNCH 111
                                  7889******************.*********.***********977 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.603961IPR017930Myb domain
SuperFamilySSF466892.6E-2711108IPR009057Homeodomain-like
SMARTSM007173.4E-121363IPR001005SANT/Myb domain
PfamPF002491.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-211568IPR009057Homeodomain-like
CDDcd001671.73E-91661No hitNo description
PROSITE profilePS5129422.34462116IPR017930Myb domain
SMARTSM007176.9E-1466114IPR001005SANT/Myb domain
PfamPF002492.0E-1167109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2269116IPR009057Homeodomain-like
CDDcd001671.70E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGRAPCCGKV GLNKGRWTAE EDEKLTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWMNY  60
LRADLKRGSI TAEEEELIVK LPTTLGNRWS LIVSHLPGRT DNEIKNYWNC HLRRKIHNLR  120
KFISNETLSV IADVTNLAAA TEPKPPADKP SSGTRRPAKK KHKAGNLRND VAAKQPEAKV  180
LLASKPLPCP PTNLDLDEGA MRDVNCFMNL DHPCAERDTT SFPNPAGGSS PSRDSTSAGH  240
AVADDNVHGI LSCSGEEREE TLNGNSMSCP GSGGQKETET LLGPHNDVTN GDDDWILCFS  300
ELMDKELLDP DELLTVSDYS AVVLTGVDQG TIMSSGGGSG GNCSMTISSS CSSEISCLDT  360
EKFDLGNNWE WIYNYLERHN EILDVEKDDM FSWLWDNDNE VGIGNGEKSN ISGYESDFDK  420
QNAIVAWLLS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241211625128MYB TRANSFORMING PROTEIN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_18.11
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904418.10.0myb-related protein Zm38-like isoform X1
STRINGevm.model.supercontig_18.110.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17349511
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-69myb domain protein 12