PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_18.100
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 443aa    MW: 49706.8 Da    PI: 9.768
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_18.100genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.4e-07130171446
                                   S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   WT+eE ++l d+++++  + +  Ia +++  Rt +++k+r+++
  evm.model.supercontig_18.100 130 WTKEETDQLFDLCERFDLR-FIVIADRFPSSRTVEELKERYYS 171
                                   *******************.*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162822.2E-30102176IPR032563DAMP1, SANT/Myb-like domain
SMARTSM007171.6E-6126175IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-6126176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-6129173IPR009057Homeodomain-like
CDDcd116582.23E-19130172No hitNo description
PfamPF054991.7E-7320382IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDAKDILGLP KTPLPITQEK KSRPQKDSQR KPDGISREVY ALTGGLAPLM PSIDVSQLKR  60
RPASDEKITW QWLPFTNSAR KDNLQLYHWV RVVNGVPPTG DYSFAKYNKL VDVIKYTDEE  120
YEKYLTDPMW TKEETDQLFD LCERFDLRFI VIADRFPSSR TVEELKERYY SVSRAILIAR  180
APSPGDVASH PLVKEPYNLS QERERKRALS MVLSQTKQQE RKDAEVLAEA KRIQETRMAA  240
RGAEEPELPV TSNAVTESAD KAVVPGDTVS PSSNAQLPVT AVAPSALAVA DNASTLASLR  300
MLWVYLRTYA LEQMVQAASS SVGLRTIKRV EQTLQDLGVN LKPKVPTKTV CAEHLELRKE  360
ILTLLNLQKQ LQYKEAEGSS FREGSFVEMP GSPKDRTFVP DSFGFGGERV GKRDQKRKGP  420
GRQLEGPSPA HKRPRKMKAP DL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A8e-22101185491DNA methyltransferase 1-associated protein 1
4iej_A8e-22101185491DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_18.100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904330.10.0SWR1-complex protein 4 isoform X2
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A061DSH00.0A0A061DSH0_THECC; Myb-like transcription factor family protein isoform 1
STRINGevm.model.supercontig_18.1000.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85432435
Representative plantOGRP6713810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]