PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_179.29
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 339aa    MW: 37684.9 Da    PI: 10.1359
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_179.29genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1471.3e-45892182134
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 
                                   a+kkdrhski T++g+RdRRvRls+++a++fF+Lqd+LGfdk+skt++WLl+++ ++ikel++ +s+s+s + ++ ssss 
  evm.model.supercontig_179.29  89 AVKKDRHSKIFTAQGLRDRRVRLSIDIARKFFALQDMLGFDKASKTLDWLLKKSRKSIKELAQMKSNSNSGVvKSLSSSSI 169
                                   89**************************************************************88888776322222222 PP

                           TCP  82 asnsssgkaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                                   ++    +++ +   +++ ++++ ++ ++ akesrakar+rarert+ekm++++
  evm.model.supercontig_179.29 170 SE----SENLEGPISRSCKEQKVKKLQKAAKESRAKARERARERTKEKMCTSK 218
                                   22....2333334466666777777788899*******************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.7E-3790216IPR005333Transcription factor, TCP
PROSITE profilePS5136934.70591149IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.264196213IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MFSSSTHTNP FSSLLIPSSS YHLLPPLSGH ETCDATFLHH LYDPLLMAPV WPSNLPQNSA  60
TILTEKNIIS NLNGDQCSGF SSLVPATKAV KKDRHSKIFT AQGLRDRRVR LSIDIARKFF  120
ALQDMLGFDK ASKTLDWLLK KSRKSIKELA QMKSNSNSGV VKSLSSSSIS ESENLEGPIS  180
RSCKEQKVKK LQKAAKESRA KARERARERT KEKMCTSKLT KSLAQCESIE KSGQNMTSSV  240
KVIAHGVLKE DDTDQDSILI SRKFKLPHSS FAYQQNLTVS GDLNCNNINY LPNVPHNWDI  300
YHTAMPHSTF SASTIMNRSS GSVQDCKSNF QIFHSIFA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_179.29
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887973.10.0transcription factor CYCLOIDEA-like
TrEMBLA0A2C9WD151e-58A0A2C9WD15_MANES; Uncharacterized protein
STRINGevm.model.supercontig_179.290.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-31TCP family protein