PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_1780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | HSF | ||||||||
Protein Properties | Length: 325aa MW: 36588.6 Da PI: 6.0767 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.8 | 9.6e-35 | 12 | 104 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 F++k++++++d++++ li+ws+ +nsf+v d+ +f+ ++Lp yFkh+nf+SFvRQLn+YgFkkv++++ weF+ evm.model.supercontig_1780.1 12 FVMKTFQMVNDPTTDMLITWSRGNNSFIVADPLDFSLRILPAYFKHNNFSSFVRQLNTYGFKKVDSDR---------WEFA 83 9****************************************************************999.........**** PP ESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkkse 103 +++F +g+k+ll++i rkk++ evm.model.supercontig_1780.1 84 NEYFLRGQKHLLKNIMRKKHA 104 ******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.4E-53 | 8 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.35E-33 | 9 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.5E-36 | 10 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 9.3E-18 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.3E-29 | 12 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.3E-18 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 51 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.3E-18 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MVMEANDVIA PFVMKTFQMV NDPTTDMLIT WSRGNNSFIV ADPLDFSLRI LPAYFKHNNF 60 SSFVRQLNTY GFKKVDSDRW EFANEYFLRG QKHLLKNIMR KKHAKSPFAM QMIMKSGEYN 120 LLEDEEIVME ITRLKQEQKS LEEELEGMNK RLEATERRPK QMMAFLNKVV EDPDLLPRML 180 LQKERTKHLT AMENKKRRLI ISSSEPSSTC YMQQQEDELA TEVTRRGVSS SSSPESLCQS 240 SPSSDNSSME WVEVAHRNDN LPAILSAVGL GNGRTASLGT PSWVLPVGSN GGYFGEVSYL 300 GIGGAGETSS SPPPYPFSLL EGGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-24 | 9 | 101 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-24 | 9 | 101 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-24 | 9 | 101 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_1780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021890728.1 | 0.0 | heat stress transcription factor C-1 | ||||
Swissprot | Q9LV52 | 2e-91 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | A0A067KBY4 | 1e-116 | A0A067KBY4_JATCU; Uncharacterized protein | ||||
TrEMBL | A0A2C9UB43 | 1e-116 | A0A2C9UB43_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_1780.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6775 | 27 | 43 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 7e-86 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_1780.1 |
Publications ? help Back to Top | |||
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