PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_178.32 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NAC | ||||||||
Protein Properties | Length: 492aa MW: 56286.6 Da PI: 7.3719 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.5 | 1e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeelv++yLk+k++g+k++l e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk evm.model.supercontig_178.32 6 LPPGFRFHPTDEELVSYYLKRKINGRKIDL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATK 85 79****************************.99***************6434555777*********************** PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatgkd++v s + ++vg+kktLv+y+grap+g +tdWvmheyrl evm.model.supercontig_178.32 86 AGYWKATGKDRKVNS-QARAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 ***************.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-65 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.087 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV SYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QARAVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDERECET ASGLQDAYAL CRVFKKNTLV PKIGEHFSTT KIDQVTSEHS 180 SSMELYSEGR CDDHLESPGY SIPVETCTPQ IANGSFSEPS DHDDHKWTQF LSNDAFTFST 240 PSFSNYTSTM QYPPSKVCNS EYHNANLGFN DDFSLNFVND DTSDQKYLDD GNMNELTSSP 300 SFEVVEEIKV NHGMFVSSRQ VAKTFFHQIV PSETVKVHLN LATISPANLS YSIHKVEKKL 360 RFDSKDDFSK NFKSFRRWKF IRIIESIKSW GKISSVVAFT IVLLLMHCFY IGEDIVEKNT 420 YLMDDHDNLR EKDGFKKNIN MNKWYQGIQC NVNGSSTEDL VASCNVYMKK LGLVLAVALA 480 LCGMWVNNNI I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-57 | 1 | 158 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-57 | 1 | 158 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-57 | 1 | 158 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-57 | 1 | 158 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-57 | 1 | 158 | 15 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-57 | 1 | 158 | 15 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-57 | 1 | 158 | 15 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-57 | 1 | 158 | 15 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-57 | 1 | 158 | 15 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-57 | 1 | 158 | 15 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-57 | 1 | 158 | 15 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-57 | 1 | 158 | 15 | 170 | NAC domain-containing protein 19 |
4dul_A | 4e-57 | 1 | 158 | 12 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-57 | 1 | 158 | 12 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_178.32 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021888064.1 | 0.0 | NAC domain-containing protein 86-like | ||||
Swissprot | Q9FFI5 | 1e-105 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | F6HFV8 | 1e-146 | F6HFV8_VITVI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_178.32 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10112 | 26 | 32 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-118 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_178.32 |
Publications ? help Back to Top | |||
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