PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_178.32
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 492aa    MW: 56286.6 Da    PI: 7.3719
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_178.32genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.51e-5661331128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk 79 
                                   lppGfrFhPtdeelv++yLk+k++g+k++l e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk
  evm.model.supercontig_178.32   6 LPPGFRFHPTDEELVSYYLKRKINGRKIDL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATK 85 
                                   79****************************.99***************6434555777*********************** PP

                           NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +gyWkatgkd++v s + ++vg+kktLv+y+grap+g +tdWvmheyrl
  evm.model.supercontig_178.32  86 AGYWKATGKDRKVNS-QARAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133
                                   ***************.9999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-654156IPR003441NAC domain
PROSITE profilePS5100562.0876156IPR003441NAC domain
PfamPF023652.5E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV SYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QARAVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECET ASGLQDAYAL CRVFKKNTLV PKIGEHFSTT KIDQVTSEHS  180
SSMELYSEGR CDDHLESPGY SIPVETCTPQ IANGSFSEPS DHDDHKWTQF LSNDAFTFST  240
PSFSNYTSTM QYPPSKVCNS EYHNANLGFN DDFSLNFVND DTSDQKYLDD GNMNELTSSP  300
SFEVVEEIKV NHGMFVSSRQ VAKTFFHQIV PSETVKVHLN LATISPANLS YSIHKVEKKL  360
RFDSKDDFSK NFKSFRRWKF IRIIESIKSW GKISSVVAFT IVLLLMHCFY IGEDIVEKNT  420
YLMDDHDNLR EKDGFKKNIN MNKWYQGIQC NVNGSSTEDL VASCNVYMKK LGLVLAVALA  480
LCGMWVNNNI I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-57115812167NO APICAL MERISTEM PROTEIN
1ut4_B4e-57115812167NO APICAL MERISTEM PROTEIN
1ut7_A4e-57115812167NO APICAL MERISTEM PROTEIN
1ut7_B4e-57115812167NO APICAL MERISTEM PROTEIN
3swm_A4e-57115815170NAC domain-containing protein 19
3swm_B4e-57115815170NAC domain-containing protein 19
3swm_C4e-57115815170NAC domain-containing protein 19
3swm_D4e-57115815170NAC domain-containing protein 19
3swp_A4e-57115815170NAC domain-containing protein 19
3swp_B4e-57115815170NAC domain-containing protein 19
3swp_C4e-57115815170NAC domain-containing protein 19
3swp_D4e-57115815170NAC domain-containing protein 19
4dul_A4e-57115812167NAC domain-containing protein 19
4dul_B4e-57115812167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_178.32
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888064.10.0NAC domain-containing protein 86-like
SwissprotQ9FFI51e-105NAC86_ARATH; NAC domain-containing protein 86
TrEMBLF6HFV81e-146F6HFV8_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_178.320.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-118NAC domain containing protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]