PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | bHLH | ||||||||
Protein Properties | Length: 347aa MW: 39313.1 Da PI: 4.6014 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.5e-12 | 177 | 220 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++P+ + K++ +iL ++eY+k L evm.model.supercontig_177.1 177 LMAERRRRKRLNDRLSMLRSIVPNiS------KMDRTSILGDTIEYMKGL 220 589*********************66......***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.421 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.16E-15 | 174 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-13 | 177 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 177 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-16 | 178 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.46E-4 | 178 | 232 | No hit | No description |
CDD | cd04873 | 4.34E-5 | 272 | 313 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MELNQQDYLE ELLGLRRDTW DNSLTFTETN EDFFFSNNDW KNLSFDGFDT DLEAINLQNS 60 FFTTEEFSGK VAGGDFCYSS FDLSTAAANS SDVPFADDNI CGQQITNSSQ NTFDTPPFHD 120 TPPLQDTPPF HMQEDCNSFG LAEDLQACFQ VESPPVFSIR RKNGRGKKME GQPSKNLMAE 180 RRRRKRLNDR LSMLRSIVPN ISKMDRTSIL GDTIEYMKGL MERIKTLQQK IEEGGSDDQL 240 NMVNIFRDVK KPNEILIRNS PKFVVERRSS DTRIELCCAG KPGLLLSTVH TLEALGLEIQ 300 KCVISCFNDF AMQASCSEEI EQRRAIGCED IKQELFRNAG YGGRCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 186 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_177.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021888100.1 | 0.0 | transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 8e-76 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A061FF70 | 1e-114 | A0A061FF70_THECC; Beta HLH protein 93 | ||||
STRING | evm.model.supercontig_177.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2043 | 28 | 78 | Representative plant | OGRP2636 | 11 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 5e-78 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_177.1 |
Publications ? help Back to Top | |||
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