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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | evm.model.supercontig_1750.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 31aa MW: 3648.44 Da PI: 12.5595 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 25.1 | 2.3e-08 | 10 | 31 | 2 | 23 |
---SHHHHHHHHHHHHHHHHHH CS
SRF-TF 2 rienksnrqvtfskRrngilKK 23
i n+s r+ tf kRr+g++KK
evm.model.supercontig_1750.1 10 NITNNSARKATFEKRRKGLMKK 31
699******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 12.671 | 1 | 31 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 4.84E-9 | 1 | 31 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.5E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.7E-7 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.5E-7 | 23 | 31 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 31 aa Download sequence Send to blast |
MTRKKVKLAN ITNNSARKAT FEKRRKGLMK K |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | evm.model.supercontig_1750.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G05860.2 | 8e-09 | M-type_MADS family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | evm.model.supercontig_1750.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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