PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_175.4
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 866aa    MW: 94320.1 Da    PI: 4.6436
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_175.4genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000576506871355
                                  HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                  R++i +++ eLr ++P+ a      K s  + L ++++Y+  Lq
  evm.model.supercontig_175.4 650 RQQIQDRIKELRGIIPNgA------KCSIDALLDLTIKYMLFLQ 687
                                  89***************66......9999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.0E-1230131IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.753637686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-4650696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-5650693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MSEAEMGSVL KQALKRLCCS NGWLLTFEDA YYEDQMGTVV NHMLLQVHML GKGIIGQAAL  60
AGSHSWVFFD THGEQSNSIG SVTNQDIFQE ETSTEFHHQF SSGIKTIVTI SVGSRGVVQF  120
GSTQKIIGQE KLLLIMVLES LEFLDQTKRM LQGMESIDGL IPLEHASSSS DFYDLDGLFA  180
TLIASENSSS GNLVQVYGGS STELIGNAAC LSASPSQSSF TSDFFIGNMT PIHGDSCHVF  240
NQLQTDVPEA QGELSSKPNT KIQSFGLPTS SVNNSVDNVP SNSAWSDDSI LAAFEPISLP  300
EKGMQDLPGV FVAKTDTLVS RGSAIKSCLG ESNVSLKYQY RSGKLTPDQN CPLERAIDHP  360
NISEKFKEAD LLADISSAFA VDDLTQWFAL SPEYDIDKIL NAANDYYSQP LHVMSESFGL  420
IGLNSLADNP IKCSAKSAQC SDADTVISDG QEVSMIIQNV ENDLFDAFGL SVACHQSGES  480
WEETLMPVVS AVRSASSSGV AELKSEFEVG FKTTPQEGLF SEGLNELLDS VGTSSSTKSG  540
LEEHFSTTKR RKVEGSSSNC NQVELVKSLS CSAGSMNLKQ PSSDWNKLNN NGSKKEVLPK  600
SQVGLWIDDS YSINAGNAVI KTTKKLEEPM NTNRKRARPG ESTRPRPKDR QQIQDRIKEL  660
RGIIPNGAKC SIDALLDLTI KYMLFLQSVT KYADKLKQTN QPKLIDRQHG LLKDSNGESH  720
GDSSDVDGGG ATWAFEVGGE TMFCPIIVED LSPPGHMLIE MLCEEQGYFL EIADNIRGFG  780
LNILKGVMEV RKSKIWAHFV VVANKHVTRL DIFWFLVQLL HQTDISEIDS TNQGGNIMDS  840
TLNGCQQPLL PPPMNLAMTY QLGAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_175.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888167.10.0uncharacterized protein LOC110807353
TrEMBLA0A2N9FZ800.0A0A2N9FZ80_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_175.40.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1561549
Representative plantOGRP152168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.16e-50conserved peptide upstream open reading frame 7