PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_170.22
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 318aa    MW: 35866.2 Da    PI: 7.8952
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_170.22genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.82.1e-14244268226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   ktelC+ + +tGtC+yG+ C+FaHg
  evm.model.supercontig_170.22 244 KTELCNKWEETGTCPYGNHCQFAHG 268
                                   9***********************8 PP
2zf-CCCH20.21e-06281306126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   ykt +Cr  +++ tC+yG rC+F H+
  evm.model.supercontig_170.22 281 YKTTICRMVLAGDTCPYGHRCHFRHS 306
                                   9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.2E-18237275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-10239274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065242270IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-8242269IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-11244268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-12276309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-9276311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.178280308IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5280307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEDDASQPSD AITFYLPGSS SSPPPLTPSD QTDDQREDFA AINFPSPSDS YFPPNSYLPS  60
SLSLSPSPSS SSPSSASTDL TTDRRLHQAR LILEYQQLCE HYDFCVARLR VLTTELDSLR  120
RENVDLRVAN TELLKLLGLS SRAAMCSHLH HPDRTPDLSA QNRTEPSRFE RINVNRRNSL  180
PKSISVRSKG YLKASQQSQG NGDTSRGSCR KQLPCKSVQQ RVRMGKISEE EELELEVYNQ  240
GMLKTELCNK WEETGTCPYG NHCQFAHGIK ELRPVIRHPR YKTTICRMVL AGDTCPYGHR  300
CHFRHSLTEQ ERLVIPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-20244309570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_170.22
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888312.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N35e-76C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2I4KKY91e-98A0A2I4KKY9_POPTR; C3H family protein
STRINGevm.model.supercontig_170.220.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.18e-73C3H family protein