PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_17.200
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HD-ZIP
Protein Properties Length: 311aa    MW: 35365 Da    PI: 4.485
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_17.200genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-1890143356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k++++  +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  evm.model.supercontig_17.200  90 KKRRLRVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 143
                                   45678899*********************************************9 PP
2HD-ZIP_I/II126.11.5e-4089180192
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrl  +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdyeaL+++y++lk++ ++L 
  evm.model.supercontig_17.200  89 EKKRRLRVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQTSYNTLKTDYDNLL 169
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   ke+++L+++++
  evm.model.supercontig_17.200 170 KEKDKLKTQVN 180
                                   *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.95E-1883147IPR009057Homeodomain-like
PROSITE profilePS5007117.05485145IPR001356Homeobox domain
SMARTSM003897.2E-1888149IPR001356Homeobox domain
CDDcd000865.89E-1690146No hitNo description
PfamPF000468.3E-1690143IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.3E-1993153IPR009057Homeodomain-like
PRINTSPR000311.3E-5116125IPR000047Helix-turn-helix motif
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5125141IPR000047Helix-turn-helix motif
PfamPF021833.8E-14145186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAGGKIYSSG SGGSNISVLI QSKKGPSSSE SLDPLFMSVS STSPFLGSRS MMSFEDVKGG  60
NGSSRSFFRG YDQDDNIEEE LEEYFQQPEK KRRLRVDQVQ FLEKSFEVEN KLEPERKIQL  120
AKDLGLQPRQ VAIWFQNRRA RWKTKQLEKD YEALQTSYNT LKTDYDNLLK EKDKLKTQVN  180
LLVEQLMERE KEKGNSELTN INSSFQQDLP EKPVAESINS EGEISKACKQ EEISSAKSDI  240
FDSDSPHYTD GVHFEPDQSD LSQDEDDNLS KTLFPAYICS KLDYSDPPTT SCNFGIPVED  300
QDHAFWSWSY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_17.200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904677.10.0homeobox-leucine zipper protein HAT5-like isoform X2
TrEMBLA0A061FXY91e-152A0A061FXY9_THECC; Homeobox protein, putative isoform 1
STRINGevm.model.supercontig_17.2000.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-46homeobox 1