PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_17.185 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | LBD | ||||||||
Protein Properties | Length: 313aa MW: 35275.1 Da PI: 6.8199 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.6 | 2e-38 | 10 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 aCaaCk++rr+C+++C+lapyfp +qpk f+n+hklFG+sn+lk+lk+l+ +++ +am+s++y++++r + Pv+G++gv + evm.model.supercontig_17.185 10 ACAACKYQRRRCSSECPLAPYFPPDQPKMFQNAHKLFGVSNILKILKTLDSNQKAEAMRSIIYQSDIRDKSPVHGCLGVTQ 90 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallkeel 101 +lq ++ +++el +++++l evm.model.supercontig_17.185 91 QLQYHIWLAEEELRAVHAQL 110 ***************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.34 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-36 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MTLKGGTSQA CAACKYQRRR CSSECPLAPY FPPDQPKMFQ NAHKLFGVSN ILKILKTLDS 60 NQKAEAMRSI IYQSDIRDKS PVHGCLGVTQ QLQYHIWLAE EELRAVHAQL EIYRQQQQQQ 120 HHQISNSLPE HHHHNHHHDV VPSQLDLGMA PPTNGLSLFN HTSNHGYSAA SMAVSHQHSY 180 SNNSSNVGYN SVYVDSKDNL SNPLWAQHQF SSLNNNNHNS MAIQSQMLGH FSQPLAAQPD 240 VIQDYDEIHP FFDTIDDRQS YMDSKKAYES RQKFNMLCSS EESLKDTTQS VEHLAENDLK 300 SAAACFSLTS VN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-28 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-28 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_17.185 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021904728.1 | 0.0 | LOB domain-containing protein 27-like | ||||
Swissprot | Q9STS6 | 1e-70 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A2N9GVD7 | 1e-135 | A0A2N9GVD7_FAGSY; Uncharacterized protein | ||||
STRING | evm.model.supercontig_17.185 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 7e-63 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_17.185 |
Publications ? help Back to Top | |||
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