PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_17.185
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family LBD
Protein Properties Length: 313aa    MW: 35275.1 Da    PI: 6.8199
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_17.185genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.62e-38101101101
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   aCaaCk++rr+C+++C+lapyfp +qpk f+n+hklFG+sn+lk+lk+l+ +++ +am+s++y++++r + Pv+G++gv +
  evm.model.supercontig_17.185  10 ACAACKYQRRRCSSECPLAPYFPPDQPKMFQNAHKLFGVSNILKILKTLDSNQKAEAMRSIIYQSDIRDKSPVHGCLGVTQ 90 
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkeel 101
                                   +lq ++  +++el +++++l
  evm.model.supercontig_17.185  91 QLQYHIWLAEEELRAVHAQL 110
                                   ***************99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.349110IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-3610107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTLKGGTSQA CAACKYQRRR CSSECPLAPY FPPDQPKMFQ NAHKLFGVSN ILKILKTLDS  60
NQKAEAMRSI IYQSDIRDKS PVHGCLGVTQ QLQYHIWLAE EELRAVHAQL EIYRQQQQQQ  120
HHQISNSLPE HHHHNHHHDV VPSQLDLGMA PPTNGLSLFN HTSNHGYSAA SMAVSHQHSY  180
SNNSSNVGYN SVYVDSKDNL SNPLWAQHQF SSLNNNNHNS MAIQSQMLGH FSQPLAAQPD  240
VIQDYDEIHP FFDTIDDRQS YMDSKKAYES RQKFNMLCSS EESLKDTTQS VEHLAENDLK  300
SAAACFSLTS VN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2861137114LOB family transfactor Ramosa2.1
5ly0_B2e-2861137114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_17.185
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904728.10.0LOB domain-containing protein 27-like
SwissprotQ9STS61e-70LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A2N9GVD71e-135A0A2N9GVD7_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_17.1850.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63032746
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.17e-63LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]