PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_17.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | TCP | ||||||||
Protein Properties | Length: 371aa MW: 41374.3 Da PI: 9.8724 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.5 | 4.7e-38 | 71 | 224 | 2 | 137 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssa 70 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a ai el++ + +++ evm.model.supercontig_17.1 71 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAIAELPSInsafpdtpkdekrvDGDPN 153 689************************************************************99999876666665544444 PP TCP 71 seceaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmriknkln 137 + ++ +++++++n++++ +++++a+s++s++s++s l+l++ r+kar rarer ++++ +n++n evm.model.supercontig_17.1 154 YQQNQTQNQNQNQNQTQNLSMSKSACSSNSETSKNSGLSLSRseirVNRNKARDRARERVAKEKESNNHQN 224 4445666666666666668888888999999999999999986444556*********6555544444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.6E-41 | 72 | 218 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.105 | 73 | 131 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.035 | 199 | 217 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MEVEEIQTHA CKFPRVGNGR KESNKLGQRE SEQQYPDDED DRGLIKRVSN SNSSNIGGWH 60 HSRIIRVSRA SGGKDRHSKV WTSKGLRDRR VRLSVTTAIQ FYDLQDRLGY DQPSKAVEWL 120 IKAASDAIAE LPSINSAFPD TPKDEKRVDG DPNYQQNQTQ NQNQNQNQTQ NLSMSKSACS 180 SNSETSKNSG LSLSRSEIRV NRNKARDRAR ERVAKEKESN NHQNANPISQ NSSFTELLTA 240 GIHTQNPTAE ANLFHKGRQW STTGTPMDYF TSGLVGPSSR THQSSGFTGQ IQLGSPQIPP 300 FNSNSSSLCL TPEVSFSYRR TKCTLLYGTP PADQNHHHHH QFSPGFDGRL QLCYGDGSRQ 360 HSDHKGKGKN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-23 | 78 | 132 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-23 | 78 | 132 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_17.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021904634.1 | 0.0 | transcription factor TCP2 | ||||
Swissprot | Q93V43 | 1e-65 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | A0A1Q3C449 | 1e-138 | A0A1Q3C449_CEPFO; TCP domain-containing protein | ||||
STRING | evm.model.supercontig_17.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7615 | 25 | 39 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-65 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_17.1 |
Publications ? help Back to Top | |||
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