PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_169.52
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family SRS
Protein Properties Length: 330aa    MW: 35928.3 Da    PI: 8.4954
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_169.52genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702183.67.9e-571152926154
                        DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsal 86 
                                   ++C+dCGn+akk+C + RCRtCCk+rg+dC th+kstWvpaa+rre+q++++a+++ a  s+ +++   kr+ +++++ + 
  evm.model.supercontig_169.52 115 KACRDCGNRAKKECGYGRCRTCCKTRGYDCVTHLKSTWVPAARRREKQAAASASTAGAGDSSGSSSCGVKRSRMASASDNN 195
                                   58**********************************************999999999999886666665555545555555 PP

                        DUF702  87 sstklssaeskkeletss.............................lPeevsseavfrcvrvssvddgeeelaYqtavsi 138
                                   ++ + +++ +++ l   s                             lP +v+++avfrc+rv+++ dg++e++Yq++v+i
  evm.model.supercontig_169.52 196 TCFRFETSFAQQGLLSFSlnikkvgfvesnqyiffcylhadsnfknsLPGQVRAPAVFRCIRVTAIADGKAEVGYQATVNI 276
                                   55554444444444333345778999******************************************************* PP

                        DUF702 139 gGhvfkGiLydqGlee 154
                                   +GhvfkG+Lyd+G++e
  evm.model.supercontig_169.52 277 SGHVFKGFLYDHGVDE 292
                                   *************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.8E-52115291IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.6E-25117158IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.2E-26243290IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MWEVSRSTKS PIVANPTNYS TFFPPPPPTK PWPPLHFPPP PPLPATTHHH NTMHTSFAHH  60
DQPTMLGLHN ILLIAPSHPN HPPNTHQTEK DHVGLGVRTA ETDDHEGDDD LGCVKACRDC  120
GNRAKKECGY GRCRTCCKTR GYDCVTHLKS TWVPAARRRE KQAAASASTA GAGDSSGSSS  180
CGVKRSRMAS ASDNNTCFRF ETSFAQQGLL SFSLNIKKVG FVESNQYIFF CYLHADSNFK  240
NSLPGQVRAP AVFRCIRVTA IADGKAEVGY QATVNISGHV FKGFLYDHGV DENNLLPCIS  300
KLQFQSGRNS ESSSPPIVGP HTAYVVSNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_169.52
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888361.11e-164protein SHI RELATED SEQUENCE 6 isoform X1
RefseqXP_021888363.11e-164protein SHI RELATED SEQUENCE 6 isoform X1
TrEMBLB9GWY77e-64B9GWY7_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_169.520.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM119592332
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54430.11e-44SHI-related sequence 6