PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_169.18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | WRKY | ||||||||
Protein Properties | Length: 127aa MW: 14238.9 Da PI: 8.6872 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 35.6 | 1.9e-11 | 106 | 126 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 dDgy+WrKYGqK++k+s++pr evm.model.supercontig_169.18 106 DDGYKWRKYGQKSIKNSPNPR 126 8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 12.817 | 100 | 126 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.3E-10 | 101 | 126 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-8 | 103 | 126 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-7 | 106 | 126 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MEEDQNLRSC SDGGEELVNE LLDNESPFMV VEKDHRVINH GESKSKSNSH LISSTLYNYS 60 GPTIQHVQDA LLLTASRRFP AMGRGFRQSE SKYTLKIKSC GNGMADDGYK WRKYGQKSIK 120 NSPNPR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_169.18 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021888384.1 | 2e-90 | probable WRKY transcription factor 49 isoform X2 | ||||
TrEMBL | A0A1Q3C8L6 | 1e-32 | A0A1Q3C8L6_CEPFO; WRKY domain-containing protein | ||||
STRING | evm.model.supercontig_169.18 | 1e-90 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9405 | 26 | 37 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 4e-21 | WRKY DNA-binding protein 49 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_169.18 |