PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_165.22
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 521aa    MW: 57458.2 Da    PI: 5.9981
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_165.22genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.67.5e-1021525093374
                          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                   + LlecA a+s ++l++a++lL +l ++asp+  +  +R++ayf++A+++r+ +s+ ++++ l   +       +  +a++
  evm.model.supercontig_165.22 152 THLLECAVAISVDNLSEAHRLLLELTQMASPYSpSCAERVVAYFAKAMSSRVINSWLGICAPLINHN-------SIQSAFQ 225
                                   689******************************8999**********************96554433.......3457999 PP

                          GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163
                                   +f+++sP++kf+h+t NqaIlea++  +rvHiiD+di +GlQWpaL++ L++R egpp+l +T++g+    s e l etg+
  evm.model.supercontig_165.22 226 VFNNISPFIKFAHFTSNQAILEAFHCRDRVHIIDLDIIHGLQWPALFHILSTRIEGPPHLTMTAMGA----SMEVLLETGK 302
                                   *******************************************************************....********** PP

                          GRAS 164 rLakfAeelgvpfefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243
                                   +L++fA++lg+pfefn++  +++ ++ +++ L++k++++laV++    h+l+d +++  +     L+l+++l P+v+++ve
  evm.model.supercontig_165.22 303 QLSNFAKRLGLPFEFNPV-DRKFGEIdDISVLKLKSDDTLAVHWLQ--HSLYDATGPEWK----ALRLLQKLAPRVITLVE 376
                                   *****************6.5555555499****************9..999988888888....***************** PP

                          GRAS 244 qeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer.leea 322
                                   qe++h  ++sFl+rf+ +l+yys++fdsl a l  ++  r+kvE+ ll rei n++a  g +r  +  +l++Wr+  + + 
  evm.model.supercontig_165.22 377 QETSHgAGGSFLDRFVGCLHYYSTIFDSLGACLDFDDPSRHKVEHCLLYREINNILAIGGPARSGED-KLRNWRSElMASN 456
                                   *****8889*****************************************************77665.5****97615668 PP

                          GRAS 323 GFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                    F +vp+s++ ++qa+l+l++++   gy++ + +gsl lgWk+ +L+++S+W+
  evm.model.supercontig_165.22 457 CFVQVPMSSNSMAQAQLILNMYSpAYGYSLVQGDGSLKLGWKNTSLLTASSWT 509
                                   9***************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.374124488IPR005202Transcription factor GRAS
PfamPF035142.6E-99152509IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MKGAFEVVHG ALDIHEPWDY SPSVNIGLIP PPPSTSIIFP KPLVLENLCF NNMEIRPDYL  60
SDWVEHATKH LINDDLPADT PTDHHTCSFQ AVTTMASQAS IHSWSNRLDD QASNFRENGA  120
TAAAAASCTS LTTGNKGLNS LTGDEEGLSL LTHLLECAVA ISVDNLSEAH RLLLELTQMA  180
SPYSPSCAER VVAYFAKAMS SRVINSWLGI CAPLINHNSI QSAFQVFNNI SPFIKFAHFT  240
SNQAILEAFH CRDRVHIIDL DIIHGLQWPA LFHILSTRIE GPPHLTMTAM GASMEVLLET  300
GKQLSNFAKR LGLPFEFNPV DRKFGEIDDI SVLKLKSDDT LAVHWLQHSL YDATGPEWKA  360
LRLLQKLAPR VITLVEQETS HGAGGSFLDR FVGCLHYYST IFDSLGACLD FDDPSRHKVE  420
HCLLYREINN ILAIGGPARS GEDKLRNWRS ELMASNCFVQ VPMSSNSMAQ AQLILNMYSP  480
AYGYSLVQGD GSLKLGWKNT SLLTASSWTS HNSPDSIPYP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-13614450913379Protein SCARECROW
5b3h_A1e-13614450912378Protein SCARECROW
5b3h_D1e-13614450912378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_165.22
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888509.10.0protein SCARECROW-like
SwissprotQ2Z2E91e-133SCR_IPONI; Protein SCARECROW
TrEMBLA0A438F0L70.0A0A438F0L7_VITVI; Protein SCARECROW
TrEMBLA5AXM80.0A5AXM8_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_165.220.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM160051115
Representative plantOGRP1135757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-134GRAS family protein