PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_165.12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 308aa    MW: 35141.6 Da    PI: 6.5078
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_165.12genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.14.9e-51101391129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrF P+deelv++yL kk+++++  l+ ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sg
  evm.model.supercontig_165.12  10 LPPGFRFYPSDEELVCHYLFKKITNDPQVLKGTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSG 90 
                                   79*************************999899***************88888999************************* PP

                           NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                   yWkatgkd++v++  ++e vg++ktLvfy++rap+g kt W+mhe+rle
  evm.model.supercontig_165.12  91 YWKATGKDRTVMDPrTKEIVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 139
                                   *************967778***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-608157IPR003441NAC domain
PROSITE profilePS5100558.19810157IPR003441NAC domain
PfamPF023653.3E-2711138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLFK KITNDPQVLK GTLVEIDLHT CEPWQLPEVA  60
KLNANEWYFF SFRDRKYATG FRTNRATTSG YWKATGKDRT VMDPRTKEIV GMRKTLVFYR  120
NRAPNGIKTG WIMHEFRLET PHMPPKEDWV LCRVFHKTKG GENSIKALSP ESMYDTYTHN  180
IILPSSVNHP VTSSPLTHHQ QNDYFPCGYE QITSSSFSRH HQIPQSNSLL STLLHGYAAA  240
QEKDSNDVVV VPSTEVVGGC KGGDDEYGLL WDMNLDENNF RDDEVHVGSS LEEMKSFDQI  300
HNSMVFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-45916316171NO APICAL MERISTEM PROTEIN
1ut4_B6e-45916316171NO APICAL MERISTEM PROTEIN
1ut7_A6e-45916316171NO APICAL MERISTEM PROTEIN
1ut7_B6e-45916316171NO APICAL MERISTEM PROTEIN
4dul_A6e-45916316171NAC domain-containing protein 19
4dul_B6e-45916316171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_165.12
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888562.10.0NAC domain-containing protein 21/22-like isoform X1
SwissprotQ84TE65e-64NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A218L0V10.0A0A218L0V1_CARPA; NAC5 protein
STRINGevm.model.supercontig_165.120.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.16e-94NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]