PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_165.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 308aa MW: 35141.6 Da PI: 6.5078 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.1 | 4.9e-51 | 10 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrF P+deelv++yL kk+++++ l+ ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sg evm.model.supercontig_165.12 10 LPPGFRFYPSDEELVCHYLFKKITNDPQVLKGTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSG 90 79*************************999899***************88888999************************* PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 yWkatgkd++v++ ++e vg++ktLvfy++rap+g kt W+mhe+rle evm.model.supercontig_165.12 91 YWKATGKDRTVMDPrTKEIVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 139 *************967778***************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-60 | 8 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.198 | 10 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-27 | 11 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 308 aa Download sequence Send to blast |
MGLRDIGATL PPGFRFYPSD EELVCHYLFK KITNDPQVLK GTLVEIDLHT CEPWQLPEVA 60 KLNANEWYFF SFRDRKYATG FRTNRATTSG YWKATGKDRT VMDPRTKEIV GMRKTLVFYR 120 NRAPNGIKTG WIMHEFRLET PHMPPKEDWV LCRVFHKTKG GENSIKALSP ESMYDTYTHN 180 IILPSSVNHP VTSSPLTHHQ QNDYFPCGYE QITSSSFSRH HQIPQSNSLL STLLHGYAAA 240 QEKDSNDVVV VPSTEVVGGC KGGDDEYGLL WDMNLDENNF RDDEVHVGSS LEEMKSFDQI 300 HNSMVFL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-45 | 9 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-45 | 9 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-45 | 9 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-45 | 9 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-45 | 9 | 163 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-45 | 9 | 163 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_165.12 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021888562.1 | 0.0 | NAC domain-containing protein 21/22-like isoform X1 | ||||
Swissprot | Q84TE6 | 5e-64 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A218L0V1 | 0.0 | A0A218L0V1_CARPA; NAC5 protein | ||||
STRING | evm.model.supercontig_165.12 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3436 | 28 | 62 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28530.1 | 6e-94 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_165.12 |