PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_163.32 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C2H2 | ||||||||
Protein Properties | Length: 189aa MW: 20949.2 Da PI: 10.3688 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 100 | 122 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H evm.model.supercontig_163.32 100 HECSICGQEFSLGQALGGHMRRH 122 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.36 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.221 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.65E-8 | 42 | 64 | No hit | No description |
Pfam | PF13912 | 4.6E-10 | 42 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 90 | 123 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.65E-8 | 95 | 122 | No hit | No description |
SMART | SM00355 | 0.079 | 100 | 122 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.847 | 100 | 122 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.2E-10 | 100 | 124 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 102 | 122 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MKRGRESEEM ESIDMAKLLI LMSQRLHYKP KIDQKLSDVN EFACKTCNRK FSSFQALGGH 60 RASHKRPKIS MGDKPISDQA ESLSLGLATT STSHVKRKIH ECSICGQEFS LGQALGGHMR 120 RHRAAINGDT SAVSVFPVLT GGPAVLKRSN SSKRVHVWLD LNLTPLENDL EFIFGKNMAP 180 KVDHRLII* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_163.32 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021888628.1 | 1e-139 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A0D2NU75 | 4e-61 | A0A0D2NU75_GOSRA; Uncharacterized protein | ||||
STRING | evm.model.supercontig_163.32 | 1e-138 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 2e-51 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_163.32 |