PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_1622.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GeBP | ||||||||
Protein Properties | Length: 386aa MW: 43165.1 Da PI: 5.2848 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 107.9 | 7.3e-34 | 166 | 253 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 lfqr+wse+Deiv+L+G++++ +k+g++p++d+daf++f+kks++ ++sksql++KirrL++K+ k++k fsk evm.model.supercontig_1622.1 166 LFQRVWSEDDEIVVLKGMLEYMSKKGTNPVSDMDAFHDFIKKSLHCDFSKSQLMDKIRRLRNKYSKNRK---------FSK 237 79**************************************************************98764.........6** PP DUF573 83 ehdqkifelskkiWgs 98 +h+qk+ +ls+kiWgs evm.model.supercontig_1622.1 238 PHEQKASDLSRKIWGS 253 **************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.3E-29 | 167 | 252 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MAPKRPNPME EPPTASSTED EEEKEEESSE GEEEEEDEDE DEPGKASKPD VNSPAAATAG 60 KKTQSSESES GTDSESETDS DSEMRPQVAN SNVKPIATKP MDETPKSKKL RSKPAASPAK 120 SAMKRASETA QDSKEAKRAK KEQEGKSDVV PDKEGKKSGE EVKKQLFQRV WSEDDEIVVL 180 KGMLEYMSKK GTNPVSDMDA FHDFIKKSLH CDFSKSQLMD KIRRLRNKYS KNRKFSKPHE 240 QKASDLSRKI WGSEGNGGAI ESTIKSNGKK NQKGNVKALT TLKADLFPRD DKEGEKEGKK 300 KIVSDENNIF SLCASEITGF DKILGLPALD ERVVMEGLNL LDPVKKAEFE GKWKKYRIAQ 360 MELFLQRTDL IQEQAKLMLE AYKTDX |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_1622.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP010988 | 0.0 | CP010988.1 Carica papaya chromosome Y sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021891508.1 | 0.0 | probable transcription factor At1g61730 | ||||
TrEMBL | A0A067G7L7 | 1e-101 | A0A067G7L7_CITSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_1622.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 | Representative plant | OGRP4222 | 5 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 4e-31 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_1622.1 |