PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_160.24
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 369aa    MW: 41416.1 Da    PI: 6.6753
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_160.24genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161462148
                                  TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W++eEd +l+ +++q+G+  +W + ++++g++R++k+c++rw++yl
  evm.model.supercontig_160.24 14 KGPWSPEEDAKLKSYIHQHGTAgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                                  79******************99*************************97 PP
2Myb_DNA-binding39.51.3e-1269111246
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   g +++eEd ++  +    G++ W+ Ia++++ gRt++++k++w++
  evm.model.supercontig_160.24  69 GGFSEEEDNIICSLYISIGSR-WSIIAAHLP-GRTDNDIKNYWNT 111
                                   569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.291962IPR017930Myb domain
SuperFamilySSF466896.25E-2611109IPR009057Homeodomain-like
SMARTSM007171.5E-121364IPR001005SANT/Myb domain
PfamPF002491.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-251569IPR009057Homeodomain-like
CDDcd001671.82E-91662No hitNo description
PROSITE profilePS5129422.20763117IPR017930Myb domain
SMARTSM007177.4E-1267115IPR001005SANT/Myb domain
PfamPF002493.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2370117IPR009057Homeodomain-like
CDDcd001672.18E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIH QHGTAGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPDIKHGG FSEEEDNIIC SLYISIGSRW SIIAAHLPGR TDNDIKNYWN TRLKKKLLGK  120
HRLQSAARRS TAGAGPSINQ DLIKKETTTQ QINPYWPELS LLRAPYPINE EPKYFSDDHE  180
TSSIRKFLAK LGESFSDHDH HDFADITNLD HYPLHDLSTT TSTQKFYDHY SMSNMTSSSS  240
SASINGTAPE LGHNQYSTDP HDGSAGSEIL QREYKGVTTS IGSVRTFNHG ETDQFISNTI  300
IRVDEMELLQ ADGLVNERLM LKEDESNYGW GEMSSLFSTT SSSSSSYEGM LQQGGFAFSE  360
CFRYPEPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_160.24
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888808.10.0transcription factor MYB87-like
TrEMBLB9GNK51e-111B9GNK5_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_160.240.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-74myb domain protein 84