PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_16.151
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 518aa    MW: 56990.7 Da    PI: 10.0571
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_16.151genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.8e-104681340
                                  SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                                   W++eE e++++a +++G + Wk++a  +  +R+++++
  evm.model.supercontig_16.151 46 QWSKEELERFYEAYRKYGRD-WKKVAGIVR-NRSAEMV 81
                                  6*****************77.*********.***9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-104188IPR009057Homeodomain-like
PROSITE profilePS512939.6124293IPR017884SANT domain
SMARTSM007171.4E-44391IPR001005SANT/Myb domain
PfamPF002491.4E-84681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-54682IPR009057Homeodomain-like
CDDcd001678.68E-74781No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MAPSRKSRNV NKKFSYVNEV ASSKDGENVS KSRQRKRKLS DMLGPQWSKE ELERFYEAYR  60
KYGRDWKKVA GIVRNRSAEM VEALYTMNRG GSDSEQESNE DIGTSRKPQK RARVKSREQT  120
SKGSEGPLSD RLQFQSASGC LSLLKKRRTG SVPRVVGKRT PRVPISCSHG KESGERYSMP  180
GRQGLKMKVN ASDDDVAHEI ALALTEASQR GGSPQVSHTP KRKTKTPSPV QKGEKMHTES  240
DMTGTKLRGS EMDEGGYELS LGSTEADNGD YAGDRSYLMS TDGPGTIEVQ QKGRRYHGKK  300
REVEDSANNH LDDIKEACSG TEEGEKLSPG KGKFEADTVD GKTTKASNKG LRKRSKKVLF  360
IQDEGSAFDA LQTLADLSLM MPETTPDTES SIQVKEEKTG NNEEYKLKGN SSIPGVKAGA  420
IKASKVGKFF ENDIHAPTEA KGINLGNSVR RKRRQKSLPS KIRQYEAPTT SQFAESPNIE  480
VAAREDSDAV ADLEEMLDIV LLRIATVGKA GRKQGNE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1448455VRRKRRQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_16.151
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905010.10.0protein ALWAYS EARLY 3
SwissprotQ6A3321e-135ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A2P5QFK50.0A0A2P5QFK5_GOSBA; Uncharacterized protein
STRINGevm.model.supercontig_16.1510.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127142427
Representative plantOGRP24791321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-137DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]