PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_158.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | bZIP | ||||||||
Protein Properties | Length: 354aa MW: 37310.9 Da PI: 5.7236 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 78 | 1.1e-24 | 254 | 316 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L++eN+ L++el++l++e++kl+se+ evm.model.supercontig_158.7 254 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLTNENHNLRDELQRLSEECEKLTSEN 316 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 5.6E-30 | 1 | 94 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 2.2E-8 | 116 | 225 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-21 | 248 | 313 | No hit | No description |
Pfam | PF00170 | 5.8E-22 | 254 | 316 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 2.7E-23 | 254 | 318 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.53 | 256 | 319 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.63E-12 | 257 | 313 | No hit | No description |
CDD | cd14702 | 3.37E-26 | 259 | 309 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 261 | 276 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090342 | Biological Process | regulation of cell aging | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MGTGEESTPP KPSKPASSTQ EIPTTPPYPD WSSSMQAYYG AGATPPPFFA STVASPGPHP 60 YLWGSQHPLI PPYGTPVPYP AIYSPGGVYA HHSMTTTPSL APTNMEVEGK GPDTKERTSV 120 KKSKGTSGGK SVEGGKAASG SGNDGASQSA ESGSEGSSDG TDENPNQQEY AGSKKGSFDQ 180 MLADANAQNN TAGAIQPSVP GKPVVSMPAT NLNIGMDLWN ASSAASGAAK MRPNPSGASS 240 AIAAPMPEQW IQDERELKRQ KRKQSNRESA RRSRLRKQAE CEELQARVET LTNENHNLRD 300 ELQRLSEECE KLTSENNSIK EELTRVCGPD AIANLEQTAK ETVAHSRGGE GNS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 270 | 276 | RRSRLRK |
2 | 270 | 277 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00039 | PBM | Transfer from AT4G36730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_158.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021888894.1 | 0.0 | G-box-binding factor 1 | ||||
Swissprot | P42774 | 1e-126 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A2I4F426 | 0.0 | A0A2I4F426_JUGRE; G-box-binding factor 1-like isoform X1 | ||||
STRING | evm.model.supercontig_158.7 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7274 | 26 | 43 | Representative plant | OGRP700 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 1e-113 | G-box binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_158.7 |