PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_158.5
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 535aa    MW: 59516 Da    PI: 5.2225
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_158.5genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS252.91.2e-7723853378374
                         GRAS  78 laalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesg 153
                                   +++k+fs +sPi+ f+++t Nqa+l++++      +Hi+Dfdi+ G+Q+++L++++a+R+     gpp +R+T+v+++e  
  evm.model.supercontig_158.5 238 HQSYKAFSGLSPIPMFAQFTVNQALLDSLDWPssPFLHIVDFDIGFGGQYASLMREMAERTdssrLGPPFVRVTAVVPEE-- 317
                                  478999***********************96645899************************766567***********66.. PP

                         GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                   + e++ ++++L++fA+el+++f++++++a+++e+l+++++++ +gE +aV l+ +++r l+++    +    +++ ++++s
  evm.model.supercontig_158.5 318 YAIETRLVKDNLTQFAQELRIRFQIEFVLARSFEMLSFKTIKFMEGERTAVLLSPAIFRRLSSE----NGAAGFVSDLRRVS 395
                                  99999*******************************************************9444....44556********* PP

                         GRAS 236 Pkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                                  P vvv+v++e  ++  +++sF ++f+++le+ys++++sl++ + ++ ++ + +E +l++++i  +v  +       +   ++
  evm.model.supercontig_158.5 396 PSVVVFVDSEgwTESsGATSFRREFVSSLEFYSMMLESLDTAAVAAGDWVRRIEMFLVRPKILAAVEGAAGP----RVGSSS 473
                                  **********553444677**********************999999*****************99888887....456889 PP

                         GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                  W+e +  aG++pv+ls++a  qa++ll k++++g++v +++++lvl+W+dr+Lv++SaWr
  evm.model.supercontig_158.5 474 WKELFFGAGMRPVSLSQFADFQAECLLGKMQVRGFHVAKRQAELVLCWQDRALVATSAWR 533
                                  ***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.648136513IPR005202Transcription factor GRAS
PfamPF035144.0E-75238533IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MRVPVTSSPQ TNQPPKPNTN NSANPAPNLG FHSNPTSCYE PTSVLDLRGS PSPATEKPAP  60
TTDVISGVAA ADPSHQSLEW DEHVLRNMDW DSIMRDLGLD DDSATNLRSV SQLTPCSDHH  120
QVVSHFTDFI ASQQFDSNPQ LVNHADINLQ DVYSNQNSGY GLNSLDHLCN NFNGFSNLNV  180
GFDFIEELIR AADCFDSNEL QLAQAILARL NQRLRSPVGN RYREPPARVF MVRDRTDHQS  240
YKAFSGLSPI PMFAQFTVNQ ALLDSLDWPS SPFLHIVDFD IGFGGQYASL MREMAERTDS  300
SRLGPPFVRV TAVVPEEYAI ETRLVKDNLT QFAQELRIRF QIEFVLARSF EMLSFKTIKF  360
MEGERTAVLL SPAIFRRLSS ENGAAGFVSD LRRVSPSVVV FVDSEGWTES SGATSFRREF  420
VSSLEFYSMM LESLDTAAVA AGDWVRRIEM FLVRPKILAA VEGAAGPRVG SSSWKELFFG  480
AGMRPVSLSQ FADFQAECLL GKMQVRGFHV AKRQAELVLC WQDRALVATS AWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2124053298378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_158.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888893.10.0LOW QUALITY PROTEIN: scarecrow-like protein 15
SwissprotO232101e-168SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1R3INZ30.0A0A1R3INZ3_9ROSI; Transcription factor GRAS
STRINGevm.model.supercontig_158.50.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Representative plantOGRP10323610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-170GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]