PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_155.28
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GATA
Protein Properties Length: 316aa    MW: 34869 Da    PI: 6.919
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_155.28genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71.1e-15222255132
                          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                                   C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ 
  evm.model.supercontig_155.28 222 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWAN 255
                                   *****99999**********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.7978113IPR010399Tify domain
SMARTSM009792.1E-1278113IPR010399Tify domain
PfamPF062001.2E-1282112IPR010399Tify domain
PfamPF062031.1E-15146188IPR010402CCT domain
PROSITE profilePS5101713.076146188IPR010402CCT domain
SMARTSM004011.1E-8216274IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-10217258No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13220256IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.70E-11221256No hitNo description
PROSITE patternPS003440222249IPR000679Zinc finger, GATA-type
PfamPF003201.6E-13222256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDNIHGSNAQ MHMSDAQHPM HVHYKHHSLQ HVSNGDVMGN ELDDGNGGGG GVSEGMEGDM  60
GSHPGNLSDN HSEIVVHGNE NGDQLTLSFQ GQVYVFDSVS PEKVQAVLLL LGGREVPQTL  120
SAIPVNSHHN NRALSATPQR FSVPQRLASL IRFREKRKER NFDKKIRYTI RKEVALRMQR  180
NKGQFTSSKS NNDDSASGAS GWASDQGWSV DGTGSQSQEI VCRHCGISEK STPMMRRGPE  240
GPRTLCNACG LMWANKLYSD WDITQDAISY SLVIPAKDLI CFSSHENYIE FSISDISCTK  300
TNLLLRLTSY ILLLW*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_155.28
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888995.10.0GATA transcription factor 28-like
RefseqXP_021888996.10.0GATA transcription factor 28-like
SwissprotQ8H1G01e-131GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A0R0IQT61e-133A0A0R0IQT6_SOYBN; Uncharacterized protein
TrEMBLA0A0R0IVL61e-132A0A0R0IVL6_SOYBN; Uncharacterized protein
TrEMBLA0A445JID01e-132A0A445JID0_GLYSO; GATA transcription factor 28 isoform D
STRINGevm.model.supercontig_155.280.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-112ZIM-LIKE 2