PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_152.36 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | WRKY | ||||||||
Protein Properties | Length: 633aa MW: 68567 Da PI: 7.1276 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.2e-30 | 361 | 419 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ evm.model.supercontig_152.36 361 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSILITTYEGNHNHP 419 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-33 | 345 | 421 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-28 | 353 | 421 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.516 | 355 | 421 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-37 | 360 | 420 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 362 | 419 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 633 aa Download sequence Send to blast |
MERGWGTLTL DSSDPLTTAA AASPFFSTKK PPPSPSPPAS LRSFFSDEKP IRDMFPQFPV 60 SLGRDQRRQT PPTSSSGDTP MSVNEVDFFN SDHRHSKQQR AAGSDRDGVK SNGAVPGANI 120 KKEIVSSHVD DNQDGARDVN IGLHLLTTNT GSDQSTVDDG GLSDMEDKRA KTTELAKLQV 180 ELQRMNVENQ RLKEMLTQVT GNYNALQMHL VTLMAQQQHE AESTQRLNIV EAKPEEKKKQ 240 DAMVPRQFIE LGPSPTTLET DELSHSSSDE RTRSGSPPRN IEAVSNHSVE KEEIAPFDHN 300 SGKRLGRDES PDSDGWGLNK AQKLNNNSSS KGIDHQSATT EANMRKARVS VRARSEAPMI 360 TDGCQWRKYG QKMAKGNPCP RAYYRCTMAV GCPVRKQVQR CAEDRSILIT TYEGNHNHPL 420 PPAAMAMAST TAAAASMLLS GSMSSAEGLM NPNLLARAIL PCSSSMATIS ASAPFPTITL 480 DLTNNPNPLQ FQRLPTQFQV PNLPQNFGSV TPQVFNQALY NQSKFSGLQL SNQDHQMGNS 540 SHLSHQSPPL SVIHPSSLQQ QQQSPNSLAD TVTATAAAIT ADPNFTVALA AAITSIINGN 600 NVHPTIAATT ANNNNNNNNN NNNNNISTSN TQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-22 | 347 | 423 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_152.36 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889128.1 | 0.0 | probable WRKY transcription factor 31 isoform X1 | ||||
Swissprot | Q9C519 | 1e-159 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A061GGS5 | 0.0 | A0A061GGS5_THECC; WRKY family transcription factor | ||||
STRING | evm.model.supercontig_152.36 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-143 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_152.36 |