PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_151.30
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 320aa    MW: 35861.5 Da    PI: 7.1823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_151.30genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-1878126355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+G+r+++ +g+W+AeIrdp++     r++lg+f ta+eAa+a+++ ++k++g
  evm.model.supercontig_151.30  78 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAKEAARAYDREARKIRG 126
                                   9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.28877134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3177135IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2277135IPR016177DNA-binding domain
SMARTSM003809.4E-3777140IPR001471AP2/ERF domain
PfamPF008473.8E-1178126IPR001471AP2/ERF domain
PRINTSPR003673.2E-117889IPR001471AP2/ERF domain
CDDcd000185.68E-3178135No hitNo description
PRINTSPR003673.2E-11100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MCGGAIIADF IPRNRSRRIT AFDLWPGSPF ANFNCNDSEK KLSRPEPPRQ EPVSFKRTLP  60
TSGDEVEKKA KRQRKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTA KEAARAYDRE  120
ARKIRGKKAK VNFPNEDDEF TVPTQTQKSN HNPPAIWNPA PPPYQTQNPR ANFNSIDFEF  180
GYDLNQVGGS FSRNSTGFNE NHAANAMSNE AVICCCEENS GTGTRSGSEC GYSYSPGFTG  240
CNQNSNNNGG VRVKEEEQEE EENEVRKLSE ELMAYENYMK FYQIPYLDGQ SPAQNTAAQE  300
SVVGDLWSFD DAPVTSGAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-21781361574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873KAKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_151.30
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889242.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A2P5AVG41e-104A0A2P5AVG4_PARAD; AP2/ERF transcription factor
STRINGevm.model.supercontig_151.300.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-40ethylene-responsive element binding protein