PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_151.27
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 283aa    MW: 31645.8 Da    PI: 8.7356
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_151.27genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.83e-1480127354
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                                   y+G+r+++ +g+W+AeIrdp++     r +lg f taeeAa+a+++ ++k +
  evm.model.supercontig_151.27  80 YRGIRQRP-WGKWAAEIRDPTK---GVRGRLGPFNTAEEAARAYDREARKSR 127
                                   9*******.**********965...3999****************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.2E-2779142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2679137IPR001471AP2/ERF domain
PROSITE profilePS5103220.73279136IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1979137IPR016177DNA-binding domain
PfamPF008471.2E-780121IPR001471AP2/ERF domain
CDDcd000182.39E-2680136No hitNo description
PRINTSPR003674.6E-118091IPR001471AP2/ERF domain
PRINTSPR003674.6E-11118138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MCGGAIVADF IRRIRSRRST AVEHWPDSTS ANSDCNDSDK KLNRPEPTRH EPVSLKRTLP  60
TSDDEKQMER TAKRQKKNLY RGIRQRPWGK WAAEIRDPTK GVRGRLGPFN TAEEAARAYD  120
REARKSRGKK SKVNFPSEDD EFIVPTQTKH YNHNPLAIST PAPPLYQTQN RRANFNSVGF  180
GFGYDRNQVA CNSTGFSENH AANATTHEAV ISCCEQNSGI GSGSGSRSDC GYSSSPEFTG  240
RNQNCNNNCG VRVKEEEQKA EAEEEENEVQ KLSEELMATR TR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1780136663ATERF1
3gcc_A1e-1780136663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_151.27
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889206.10.0ethylene-responsive transcription factor RAP2-2-like
TrEMBLA0A445IH112e-70A0A445IH11_GLYSO; Ethylene-responsive transcription factor RAP2-3
TrEMBLC6TJ942e-70C6TJ94_SOYBN; Uncharacterized protein
STRINGevm.model.supercontig_151.270.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.17e-28ERF family protein