PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_150.6
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 452aa    MW: 49494.5 Da    PI: 7.4485
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_150.6genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.6e-06103128426
                                  ---SGGGGTS...--TTTTT-SS-SS CS
                      zf-CCCH   4 elCrffartG...tCkyGdrCkFaHg 26 
                                   lC+  a+tG    C+y d+C+F+H+
  evm.model.supercontig_150.6 103 NLCPEVAKTGdtsACPYKDKCRFSHD 128
                                  59***********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.07299129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.42299130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4103130IPR000571Zinc finger, CCCH-type
SMARTSM0035635140165IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.291143168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.702.7E-9325367IPR013785Aldolase-type TIM barrel
SuperFamilySSF513958.97E-6329367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEDSAAEVAD LPLVEGDNPP SALTMEKDSN GFGQATPEEL VSRAIAPVKR EFLRPPPSRT  60
TEQQNDAIQE AQAKPSQPGL LKEKKSKRQL KRERREEKKS AMNLCPEVAK TGDTSACPYK  120
DKCRFSHDLE AFNAQKPVDL EGECPFMSPG ASCPYGVTCR FAGTHKDGGQ VGFSTLGKRS  180
SEINILNKDF QKLLWKNKVR FPKADAKLKS FGLQGKAYSK KMLEDKKEAN QIMSNGSLGD  240
DENDCTRVSN STAETRSALE APSGVNPNET CATDEPPLKK AKSNDDVDVL KKDNARAEQE  300
GVEDIIVTDS DESLKLHPRE KKLIDFREKL YLAPLTTVGN LPFRRLCKAL GADITCGEMA  360
MCSNLLQVCL CPLLCLPLVI DDGTANKVVL IQNTASTMQG FSLEYPLSKK LFLIYPSVSF  420
SLNNSLLRRV TVLGSCLAVG DKYLGDKYLG T*
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_150.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889313.10.0LOW QUALITY PROTEIN: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ9T0J61e-104DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A061DYQ21e-134A0A061DYQ2_THECC; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGevm.model.supercontig_150.60.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP57511213
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]