PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_150.46 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | SRS | ||||||||
Protein Properties | Length: 248aa MW: 27532.3 Da PI: 8.6276 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 196.4 | 9.2e-61 | 13 | 161 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqs 84 g+a+CqdCGnqakkdC+++RCRtCCk++gf+C+th+kstWvp+++rr+r +q+ ++++ + ++++ ++++ +++ evm.model.supercontig_150.46 13 GSARCQDCGNQAKKDCMYRRCRTCCKNKGFQCQTHIKSTWVPSYRRRQRYNQMLHHHHHHLTPSSSSIDHHHHP---AENP 90 6789*********************************************8877766555555444444443333...2333 PP DUF702 85 alsstklssaeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 + +++ + +s++ le+ ++P ev+s+avfrcv+vss dd g +++aYqtavsigGhvfkGiLydqG+++ evm.model.supercontig_150.46 91 KRLRQNSQYLTSSSGLEKGDFPGEVRSTAVFRCVQVSSTDDhGIKQYAYQTAVSIGGHVFKGILYDQGPDD 161 33333334455667899999*********************8899************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.8E-57 | 14 | 160 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.4E-26 | 17 | 58 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 6.9E-26 | 111 | 159 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MGQGGDYGFL FGGSARCQDC GNQAKKDCMY RRCRTCCKNK GFQCQTHIKS TWVPSYRRRQ 60 RYNQMLHHHH HHLTPSSSSI DHHHHPAENP KRLRQNSQYL TSSSGLEKGD FPGEVRSTAV 120 FRCVQVSSTD DHGIKQYAYQ TAVSIGGHVF KGILYDQGPD DHDRDHHHQY YSRTGQETVL 180 QQRPNYEANV GALEAASGDD GRIAYRSAAS VEALIIPSSA ATSTCPIFSF SAFMSGTPFS 240 SSSNPRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_150.46 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889300.1 | 0.0 | protein SHI RELATED SEQUENCE 3 | ||||
Swissprot | Q9SD40 | 2e-47 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A061E6J8 | 4e-58 | A0A061E6J8_THECC; Lateral root primordium protein-related | ||||
STRING | evm.model.supercontig_150.46 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9188 | 26 | 38 | Representative plant | OGRP1313 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 5e-49 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_150.46 |
Publications ? help Back to Top | |||
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