PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_15.30

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Dof

Protein Properties

Length: 288aa MW: 31148.7 Da PI: 8.6936

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_15.30	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.5e-39	34	95	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss evm.model.supercontig_15.30 34 KEHALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 95 67899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	26	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-33	36	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.134	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDTAAQWPQE IVVKPIEEIV TKPAAIERKV RPQKEHALNC PRCNSTNTKF CYYNNYSLTQ 60 PRYFCKTCRR YWTEGGSLRN IPVGGGSRKN KRSSSSSTSS SSIISSSKKL SDLISAPLQN 120 PNDQAQDLNL SFPATAPQGF ASLSQLVQVP TIDNNNNNNK NQISSTTSTT TTTSTSTATT 180 TQLSALELLT GMSTRGLNSF MPMPIPDPTS VYTSGLTFPL QDLKPTLNFS LDGLGTGYGS 240 LQETNGRLLF PFEDLKQVSS TGEIGQNREQ GDSAGYWTGM LGGSGSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_15.30

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021905076.1	0.0	dof zinc finger protein DOF4.6
Swissprot	Q8LAP8	1e-61	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A0D2U9N9	1e-129	A0A0D2U9N9_GOSRA; Uncharacterized protein
STRING	evm.model.supercontig_15.30	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	3e-51	Dof family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_15.30

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]