PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_15.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 517aa    MW: 57012.2 Da    PI: 7.8535
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_15.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.13.9e-24129229198
                                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                 f+kvlt sd++++g +++ +k+a+e+       ++ +++  +l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +
  evm.model.supercontig_15.1 129 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQLTPTQ--ELIAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVA 209
                                 99****************************987777666..8***************************************** PP

                                 T-EEEEEE-SSSEE..EEEEE- CS
                          B3  77 gDfvvFkldgrsefelvvkvfr 98 
                                 gD++vF   + +++el+v+v+r
  evm.model.supercontig_15.1 210 GDSFVFL--RGENGELRVGVRR 229
                                 *******..449999*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-41120258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-41122244IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-21127229No hitNo description
SMARTSM010191.6E-23129231IPR003340B3 DNA binding domain
PfamPF023623.8E-22129229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.139129231IPR003340B3 DNA binding domain
PfamPF023099.4E-8444507IPR033389AUX/IAA domain
PROSITE profilePS5174514.605471516IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MATRGGSFSQ PIGVSPEGCG GDDLYTELWK ACAGPLVEVP RAGEKVFYFP QGHMEQLEAS  60
TNQELNQRTP LFNLPSKILC RVVHIRLLAE QETDDVYAQI TLLPEPNQTE PTNPDSCPPE  120
PPRPTLHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM TQLTPTQELI AKDLHGYEWR  180
FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DSFVFLRGEN GELRVGVRRV ARQQSSMPSS  240
VISSQSMHLG VLATASHAVS TQTLFVVYYK PSASGPWNSG LQQSHDFTQL SVSAEGKRNE  300
DHVIRHHKQT DLSSNRNSIS RTQNEAGWLP SAHLGIHPHL YQDVTEDSKS ISTWPVLTGY  360
SIIHSSKLNN NPILDPGEKG KKSDTLASCR LFGFELKNHC TSNVPVEKAS PVQHISVDSG  420
TTEGLLISGL SAADSDQKSE LSKASKEKKQ EQAQVSAKEI YSRQSCSTST RSRTKVQMQG  480
VAVGRAVDLT ILKGYDRLID ELEKMFDIKG QLHPKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1311627411269Auxin response factor 1
4ldw_A1e-1311627411269Auxin response factor 1
4ldw_B1e-1311627411269Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_15.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905101.10.0LOW QUALITY PROTEIN: auxin response factor 11-like
SwissprotQ9C5W91e-159ARFR_ARATH; Auxin response factor 18
TrEMBLA0A061G5F30.0A0A061G5F3_THECC; Auxin response factor
STRINGevm.model.supercontig_15.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2767633
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-133auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]