PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_149.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | SBP | ||||||||
Protein Properties | Length: 202aa MW: 22399.9 Da PI: 9.1378 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.6 | 5.7e-41 | 115 | 192 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+hska++v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ evm.model.supercontig_149.2 115 RCQVEGCDVALVNAKDYHRRHKVCEMHSKAAKVVVLGIEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 192 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.3E-34 | 112 | 177 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.334 | 113 | 190 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.54E-39 | 114 | 195 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.3E-32 | 116 | 189 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEVGGNIFSN SIGNNWDIWE LNVNASASGN LYTPQPQTAG STNPQVYQHS LYCGDGSRLH 60 PDPHLMCLKL GKRQYFEDAN TPVVERLKRG KSYYGLSAGG SGGVVCSATA VPVPRCQVEG 120 CDVALVNAKD YHRRHKVCEM HSKAAKVVVL GIEQRFCQQC SRFHVVSEFD DSKRSCRRRL 180 AGHNERRRKS SHDSVAKNSS QX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-31 | 116 | 189 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_149.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889329.1 | 1e-151 | squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q7XT42 | 4e-43 | SPL7_ORYSJ; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A1Q3B117 | 3e-76 | A0A1Q3B117_CEPFO; SBP domain-containing protein | ||||
STRING | evm.model.supercontig_149.2 | 1e-150 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15613 | 9 | 14 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 6e-39 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_149.2 |
Publications ? help Back to Top | |||
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