PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_148.5

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Trihelix

Protein Properties

Length: 330aa MW: 37160.8 Da PI: 5.5815

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_148.5	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.2	6.8e-11	50	119	2	71
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 Wt + l L++ +e + +++ + ++W+ +s+++ + + rs +qC+ kw +l +y +ik++e+ evm.model.supercontig_148.5 50 WTVEDMLILVNEIAAVEADCSNALSTYQRWKIISENCTALDVPRSLNQCRRKWGSLLVEYNQIKQWESLS 119 999****************************************************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.7E-8	49	125	No hit	No description
PROSITE profile	PS50090	6.771	50	106	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MEATQMPDET ESHQTPQEKN VRDGQMEQGD NSQVRVSGSR CTRSQVAPDW TVEDMLILVN 60 EIAAVEADCS NALSTYQRWK IISENCTALD VPRSLNQCRR KWGSLLVEYN QIKQWESLSS 120 GSYWSLGIGS RKQFGLPDYF DYELFKAIDN VVRAQEDKAD TDPESDPDAE TDTLEIVAQL 180 GSNGPTRRLN IMEQKPHEIR KEDTKLKWCT EKSHPGRKPQ KSSAKKKLLK NDMKGKRTIS 240 IEAKEQTVAA FTEAKEQSLA AKLQESAELI HAIVKENLSE KAKRVNSTVK NAEEFKTDVI 300 RRQGNRLIAC LGVMIESLNQ ICDVVQNGE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_148.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021889334.1	0.0	trihelix transcription factor ASR3
STRING	evm.model.supercontig_148.5	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12154	23	28
Representative plant	OGRP7482	13	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	4e-69	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_148.5