PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_1401.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | TCP | ||||||||
Protein Properties | Length: 482aa MW: 53102.7 Da PI: 9.0539 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 155.8 | 2.5e-48 | 129 | 296 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................. 65 gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k aikelt+ evm.model.supercontig_1401.1 129 NGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKSAIKELTEIsmprgknttaysgggks 209 58**************************************************************66666544444443221 PP TCP 66 .ssssaseceaesssssasnsssg................................kaaksaakskksqksaasalnlake 113 s + ++es + +++ ak+kks ++a +nla+e evm.model.supercontig_1401.1 210 aS-----S-TSES----------EvvsggiifkdstykeingqdegdiavnesfmgVINPKGAKNKKSCHKAPGSNNLARE 274 11.....1.1122..........1223344444445556666677788899999974444444777777777778****** PP TCP 114 srakarararertrekmriknk 135 sr karararert ekm++k evm.model.supercontig_1401.1 275 SRDKARARARERTMEKMKMKGA 296 *******************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.6E-47 | 130 | 294 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 37.5 | 131 | 189 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.666 | 273 | 290 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MFPSSGNNST YSPFPFTISA SFAANQNPNS THEENYPSPF FHFPSSFLDD DNEFLMNQLL 60 PQQRILSSAP CNLVSDYNST HEVNNNNSTT VASTGRKSTK NVTSSGKKRS SKGGNGNGAA 120 KQMVPRKRNG KKDRHSKIYT AQGPRDRRMR LSLQIARKFF DLQDMLGFDK ASKTIEWLFS 180 KSKSAIKELT EISMPRGKNT TAYSGGGKSA SSTSESEVVS GGIIFKDSTY KEINGQDEGD 240 IAVNESFMGV INPKGAKNKK SCHKAPGSNN LARESRDKAR ARARERTMEK MKMKGALDPN 300 YIKQCSDHEA GNPNEFEHLA SSKELKSSGK AVIEEEDQEV QEPSLHLLQH QMDSVGIIEK 360 FLGIMNSDSS TVDSREANYP DYTGNWMINR DVSTLCESIK RSSSTGNVVQ VQNPSSIFMI 420 NPDAQEENTT SFFMTNSAMK GRNQHSSIFS NAHDQRNPSS IFISTSSIGL MGSHLSCSSD 480 AX |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_1401.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021892929.1 | 0.0 | transcription factor TCP12, partial | ||||
STRING | evm.model.supercontig_1401.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11632 | 25 | 33 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-37 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_1401.1 |