PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_140.55

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

ZF-HD

Protein Properties

Length: 328aa MW: 35807.1 Da PI: 7.8331

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_140.55	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	110.2	1.1e-34	48	103	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 ++YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++e evm.model.supercontig_140.55 48 ITYKECLKNHAASLGGHALDGCGEFMPSPSSTpSDPTSLKCAACGCHRNFHRRDPE 103 68***************************99******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-18	48	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	6.1E-29	48	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.1E-31	49	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.594	50	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.5E-29	192	262	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.14E-19	194	262	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.7E-24	201	258	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MDIAPTPTPK SPEPESETPT RIQPAKPISF TNGVLKRNHH HHQHPVIITY KECLKNHAAS 60 LGGHALDGCG EFMPSPSSTP SDPTSLKCAA CGCHRNFHRR DPEDPPPTNT ATTAIEYQPH 120 HRHHPPPPPS HRSPNSASPP PISSAYYPSA PHMLLALSGS GLHSHPDNIN SNNNHHMGSN 180 SHVNLSSAAI AAMSNQNPSS RKRFRTKFSQ FQKDRMLEFA ERVGWKMQKR DEDLVQEFCS 240 EVGVDKGVLK VWMHNNKNTF GKRDINGGGG RTGNIDSNDN NSENNHNDNS NDGNNNDGSH 300 GHNLNHHRFE SDSHVAHVGT NGSSSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-21	200	259	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_140.55

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021889726.1	0.0	zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	4e-89	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A1R3GUV9	1e-117	A0A1R3GUV9_9ROSI; Uncharacterized protein
TrEMBL	A0A1R3I9N5	1e-117	A0A1R3I9N5_COCAP; Uncharacterized protein
STRING	evm.model.supercontig_140.55	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	3e-37	homeobox protein 34

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_140.55

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]