PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_14.231
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 410aa    MW: 47016.4 Da    PI: 6.3318
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_14.231genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.37.1e-28298351255
                       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   +r+ W++eLH rFv+a++ LGG e+AtPk+i+e+m+v+gLt e+vkSHLQ+YRl
  evm.model.supercontig_14.231 298 KRRSWSSELHGRFVQALDLLGGDEVATPKQIKEIMQVEGLTSEQVKSHLQRYRL 351
                                   799**************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.187294354IPR017930Myb domain
SuperFamilySSF466897.88E-16295354IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-24296352IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-25297353IPR006447Myb domain, plants
PfamPF002497.2E-7299350IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MESKGLELSL TLNSTYFPKT VDDLVKVLKN IESDNDKAPI LLDYLLDHEK DVNNVKKAIQ  60
GQLPHCVQLL QNVIHDMFSK KKIALQEFIL PPNMFGHLDQ KPIISKKSTK EENDSIAAHS  120
AELFYEFIID DNDDDKKGKV LINSTNPVQQ YKGNDKKRPF MTFNTVPSAF NWENEDNEEV  180
IPEVPELKLF LGKQDFNPHI PELRLSLNKQ ASSIPIMEVG HEKQVTWSHM LEKRHGKQVV  240
KLEVPATDYS KQVLGAQQRD AKVPKIEPFA FRGLNLKSDF ETLNHFPMPL TQPILKNKRR  300
SWSSELHGRF VQALDLLGGD EVATPKQIKE IMQVEGLTSE QVKSHLQRYR LRQDYIRQYC  360
HQDVIQSNFP DDDDDDNNDV NQNVAKAFKE NKMMDTFSPS CECGSKRGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_14.231
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905360.10.0uncharacterized protein LOC110820240
STRINGevm.model.supercontig_14.2310.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15410716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-19G2-like family protein