PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_14.213
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 198aa    MW: 22308.1 Da    PI: 4.5732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_14.213genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM22.33.7e-07511110115
                           NAM  10 tdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgk 88 
                                   td++ +v yL++k+ +  l++ +++++  i k+ +P++    ++  ++++ +F++r++ +   +     a + g+W+   +
  evm.model.supercontig_14.213   5 TDDQKIVIYLNPKIMKLVLPF-RIMHTEAIDKLsHPREYI-LMRPASDSCRYFCTRREVSLgLDISDIVAEAMGFWRPASE 83 
                                   5777778***********999.7788888877659*9996.34444456655666555544045555557789****8888 PP

                           NAM  89 ..dkevlskkgelvglkktLvfykgrapk 115
                                      ++++  kg+++g k+ Lv+++ ++ k
  evm.model.supercontig_14.213  84 dgPEDIFY-KGKKIGEKRELVYWESHRTK 111
                                   23478999.9999**********765554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-75112IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MESLTDDQKI VIYLNPKIMK LVLPFRIMHT EAIDKLSHPR EYILMRPASD SCRYFCTRRE  60
VSLGLDISDI VAEAMGFWRP ASEDGPEDIF YKGKKIGEKR ELVYWESHRT KEQVGDLKGR  120
LVYKLKYMID DTESELDEES SAEKPDDVDG ETAEAEAEAE AGAAAVAKAF VLDIEKKDEP  180
SAASQDSPKN NWSGRRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_14.213
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGevm.model.supercontig_14.2131e-143(Carica papaya)