PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_14.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 343aa    MW: 38657.7 Da    PI: 8.3821
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_14.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.51.2e-3169738128
                         NAM  38 diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgekt 119
                                 di k++   Lp+ ++++ekewyf+++rd+ky++++r+nr+t+ g+Wkatg+d++++s+  ++ +glkk+Lvfykgra kg kt
  evm.model.supercontig_14.2   6 DIDKADDILLPELATTGEKEWYFYCQRDRKYRNSSRPNRVTRGGFWKATGTDRPIYSSnATNCIGLKKSLVFYKGRAAKGMKT 88 
                                 677777777887777899***************************************855566******************** PP

                         NAM 120 dWvmheyrl 128
                                 dW+mhe+rl
  evm.model.supercontig_14.2  89 DWMMHEFRL 97 
                                 *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.7441128IPR003441NAC domain
SuperFamilySSF1019411.57E-355128IPR003441NAC domain
PfamPF023651.7E-132397IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEEKHDIDKA DDILLPELAT TGEKEWYFYC QRDRKYRNSS RPNRVTRGGF WKATGTDRPI  60
YSSNATNCIG LKKSLVFYKG RAAKGMKTDW MMHEFRLPSS SESHPQKKLH DKNLSAHDTW  120
AICRIFKKTN PMAQRPFASL QNVSTTTEIG STIHLCCNDI QTPLEIPNFS YKVIPVNNNP  180
TIYKHQIFTS SFPNNLVFSP MEMPQLNCDA PSISMLLNDN NNNKSAAVVD DFKDSSQQVG  240
NNFSMGLDQE MAINDNEVLL KKNSTSSNDW GSSITSVGFP YNLTSDLSWE STSCLGEIIC  300
PFGYASQDGR VGLRRQFQVL VRKGMGSNPI LDISVFVLRF SR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-34612856168NAC domain-containing protein 19
3swm_B5e-34612856168NAC domain-containing protein 19
3swm_C5e-34612856168NAC domain-containing protein 19
3swm_D5e-34612856168NAC domain-containing protein 19
3swp_A5e-34612856168NAC domain-containing protein 19
3swp_B5e-34612856168NAC domain-containing protein 19
3swp_C5e-34612856168NAC domain-containing protein 19
3swp_D5e-34612856168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_14.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818892e-38LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132632e-38LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023928869.18e-91protein FEZ-like
TrEMBLA0A2N9FZV18e-92A0A2N9FZV1_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_14.20.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-62NAC domain containing protein 94